Analysis of interatomic Contacts of Structural Units in PDB entry:
3LJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LJC entry

There is 1 chain in PDB entry 3LJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7ASP 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 3LJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 45Right-handed alpha
Helix 2
2
A
123 146Right-handed alpha
Helix 3
3
A
149 156Right-handed alpha
Helix 4
4
A
161 172Right-handed alpha
Helix 5
5
A
176 186Right-handed alpha
Helix 6
6
A
188 243Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 3LJC.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
88 99anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
49 54anti-parallel
Strand 5
A
12 16parallel
Strand 6
A
109 113anti-parallel
Strand 7
A
102 106anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il