Analysis of interatomic Contacts of Structural Units in PDB entry:
3LJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LJI entry

There is 1 chain in PDB entry 3LJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3LJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 19Right-handed alpha
Helix 2
2
A
20 23Right-handed 310
Helix 3
3
A
26 28Right-handed 310
Helix 4
4
A
29 41Right-handed alpha
Helix 5
5
A
46 59Right-handed alpha
Helix 6
6
A
62 65Right-handed 310
Helix 7
7
A
66 85Right-handed alpha
Helix 8
8
A
100 105Right-handed alpha
Helix 9
9
A
106 126Right-handed alpha
Helix 10
10
A
134 150Right-handed alpha
Helix 11
11
A
153 164Right-handed alpha
Helix 12
12
A
170 182Right-handed alpha
Helix 13
13
A
182 197Right-handed alpha
Helix 14
14
A
201 227Right-handed alpha
Helix 15
15
A
249 255Right-handed alpha
Helix 16
16
A
255 274Right-handed alpha
Helix 17
17
A
278 280Right-handed 310
Helix 18
18
A
281 292Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3LJI.

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
98 99anti-parallel
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