Analysis of interatomic Contacts of Structural Units in PDB entry:
3LK6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3LK6 entry

There are 3 chains in PDB entry 3LK6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 28	LEU 642
B	ARG 31	LEU 642
C	SER 27	ILE 89

There are104 helices in PDB entry 3LK6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	28	40	Right-handed alpha
Helix 2	2	A	43	50	Right-handed alpha
Helix 3	3	A	74	85	Right-handed alpha
Helix 4	4	A	98	113	Right-handed alpha
Helix 5	5	A	140	148	Right-handed alpha
Helix 6	6	A	149	168	Right-handed alpha
Helix 7	7	A	188	192	Right-handed 310
Helix 8	8	A	196	214	Right-handed alpha
Helix 9	9	A	225	229	Right-handed 310
Helix 10	10	A	243	250	Right-handed alpha
Helix 11	11	A	251	261	Right-handed alpha
Helix 12	12	A	293	296	Right-handed 310
Helix 13	13	A	297	302	Right-handed alpha
Helix 14	14	A	322	330	Right-handed alpha
Helix 15	15	A	330	342	Right-handed alpha
Helix 16	16	A	358	374	Right-handed alpha
Helix 17	17	A	378	396	Right-handed alpha
Helix 18	18	A	406	416	Right-handed alpha
Helix 19	19	A	420	435	Right-handed alpha
Helix 20	20	A	442	444	Right-handed 310
Helix 21	21	A	461	478	Right-handed alpha
Helix 22	22	A	497	507	Right-handed alpha
Helix 23	23	A	534	536	Right-handed 310
Helix 24	24	A	537	553	Right-handed alpha
Helix 25	25	A	564	571	Right-handed 310
Helix 26	26	A	594	604	Right-handed alpha
Helix 27	27	B	31	40	Right-handed alpha
Helix 28	28	B	43	50	Right-handed alpha
Helix 29	29	B	74	85	Right-handed alpha
Helix 30	30	B	98	113	Right-handed alpha
Helix 31	31	B	140	148	Right-handed alpha
Helix 32	32	B	149	168	Right-handed alpha
Helix 33	33	B	188	192	Right-handed 310
Helix 34	34	B	196	214	Right-handed alpha
Helix 35	35	B	225	229	Right-handed 310
Helix 36	36	B	243	250	Right-handed alpha
Helix 37	37	B	251	261	Right-handed alpha
Helix 38	38	B	293	296	Right-handed 310
Helix 39	39	B	297	302	Right-handed alpha
Helix 40	40	B	322	330	Right-handed alpha
Helix 41	41	B	330	342	Right-handed alpha
Helix 42	42	B	358	374	Right-handed alpha
Helix 43	43	B	378	396	Right-handed alpha
Helix 44	44	B	406	416	Right-handed alpha
Helix 45	45	B	420	435	Right-handed alpha
Helix 46	46	B	442	444	Right-handed 310
Helix 47	47	B	461	478	Right-handed alpha
Helix 48	48	B	497	507	Right-handed alpha
Helix 49	49	B	534	536	Right-handed 310
Helix 50	50	B	537	553	Right-handed alpha
Helix 51	51	B	564	571	Right-handed 310
Helix 52	52	B	594	604	Right-handed alpha
Helix 53	53	C	27	40	Right-handed alpha
Helix 54	54	C	43	50	Right-handed alpha
Helix 55	55	C	74	85	Right-handed alpha
Helix 56	56	C	98	113	Right-handed alpha
Helix 57	57	C	140	148	Right-handed alpha
Helix 58	58	C	149	168	Right-handed alpha
Helix 59	59	C	188	192	Right-handed 310
Helix 60	60	C	196	214	Right-handed alpha
Helix 61	61	C	225	229	Right-handed 310
Helix 62	62	C	243	250	Right-handed alpha
Helix 63	63	C	251	261	Right-handed alpha
Helix 64	64	C	293	296	Right-handed 310
Helix 65	65	C	297	302	Right-handed alpha
Helix 66	66	C	322	330	Right-handed alpha
Helix 67	67	C	330	342	Right-handed alpha
Helix 68	68	C	358	374	Right-handed alpha
Helix 69	69	C	378	396	Right-handed alpha
Helix 70	70	C	406	416	Right-handed alpha
Helix 71	71	C	420	435	Right-handed alpha
Helix 72	72	C	442	444	Right-handed 310
Helix 73	73	C	461	478	Right-handed alpha
Helix 74	74	C	497	507	Right-handed alpha
Helix 75	75	C	534	536	Right-handed 310
Helix 76	76	C	537	553	Right-handed alpha
Helix 77	77	C	564	571	Right-handed 310
Helix 78	78	C	594	604	Right-handed alpha
Helix 79	79	D	30	40	Right-handed alpha
Helix 80	80	D	43	50	Right-handed alpha
Helix 81	81	D	74	85	Right-handed alpha
Helix 82	82	D	98	113	Right-handed alpha
Helix 83	83	D	140	148	Right-handed alpha
Helix 84	84	D	149	168	Right-handed alpha
Helix 85	85	D	188	192	Right-handed 310
Helix 86	86	D	196	214	Right-handed alpha
Helix 87	87	D	225	229	Right-handed 310
Helix 88	88	D	243	250	Right-handed alpha
Helix 89	89	D	251	261	Right-handed alpha
Helix 90	90	D	293	296	Right-handed 310
Helix 91	91	D	297	302	Right-handed alpha
Helix 92	92	D	322	330	Right-handed alpha
Helix 93	93	D	330	342	Right-handed alpha
Helix 94	94	D	358	374	Right-handed alpha
Helix 95	95	D	378	396	Right-handed alpha
Helix 96	96	D	406	416	Right-handed alpha
Helix 97	97	D	420	435	Right-handed alpha
Helix 98	98	D	442	444	Right-handed 310
Helix 99	99	D	461	478	Right-handed alpha
Helix 100	100	D	497	507	Right-handed alpha
Helix 101	101	D	534	536	Right-handed 310
Helix 102	102	D	537	553	Right-handed alpha
Helix 103	103	D	564	571	Right-handed 310
Helix 104	104	D	594	604	Right-handed alpha

There are 36 sheets in PDB entry 3LK6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	346	347	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	68	69	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	119	122	parallel
Strand 3	A	171	172	parallel
Strand 4	A	217	223	parallel
Strand 5	A	265	268	parallel
Strand 6	A	314	317	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	237	239	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	282	first strand
Strand 2	A	289	291	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	440	first strand
Strand 2	A	576	579	anti-parallel
Strand 3	A	557	561	parallel
Strand 4	A	509	514	parallel
Strand 5	A	454	459	parallel
Strand 6	A	485	490	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	524	first strand
Strand 2	A	527	528	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	587	first strand
Strand 2	A	590	591	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	617	618	first strand
Strand 2	A	626	628	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	346	347	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	68	69	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	119	122	parallel
Strand 3	B	171	172	parallel
Strand 4	B	217	223	parallel
Strand 5	B	265	268	parallel
Strand 6	B	314	317	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	237	239	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	282	first strand
Strand 2	B	289	291	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	440	first strand
Strand 2	B	576	579	anti-parallel
Strand 3	B	557	561	parallel
Strand 4	B	509	514	parallel
Strand 5	B	454	459	parallel
Strand 6	B	485	490	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	524	first strand
Strand 2	B	527	528	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	587	first strand
Strand 2	B	590	591	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	617	618	first strand
Strand 2	B	626	628	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	346	347	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	68	69	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	119	122	parallel
Strand 3	C	171	172	parallel
Strand 4	C	217	223	parallel
Strand 5	C	265	268	parallel
Strand 6	C	314	317	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	232	first strand
Strand 2	C	237	239	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	282	first strand
Strand 2	C	289	291	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	440	first strand
Strand 2	C	576	579	anti-parallel
Strand 3	C	557	561	parallel
Strand 4	C	509	514	parallel
Strand 5	C	454	459	parallel
Strand 6	C	485	490	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	523	524	first strand
Strand 2	C	527	528	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	587	first strand
Strand 2	C	590	591	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	617	618	first strand
Strand 2	C	626	628	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	346	347	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	59	first strand
Strand 2	D	68	69	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	122	first strand
Strand 2	D	171	172	parallel
Strand 3	D	217	223	parallel
Strand 4	D	265	268	parallel
Strand 5	D	314	317	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	232	first strand
Strand 2	D	237	239	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	282	first strand
Strand 2	D	289	291	anti-parallel

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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	436	440	first strand
Strand 2	D	576	579	anti-parallel
Strand 3	D	557	561	parallel
Strand 4	D	509	514	parallel
Strand 5	D	454	459	parallel
Strand 6	D	485	490	parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	523	524	first strand
Strand 2	D	527	528	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	586	587	first strand
Strand 2	D	590	591	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	617	618	first strand
Strand 2	D	626	628	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3LK6

Analysis of interatomic Contacts of Structural Units in PDB entry:
3LK6