Analysis of interatomic Contacts of Structural Units in PDB entry:
3LKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LKV entry

There is 1 chain in PDB entry 3LKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 26LYS 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 3LKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 55Right-handed alpha
Helix 2
2
A
73 86Right-handed alpha
Helix 3
3
A
96 107Right-handed alpha
Helix 4
4
A
144 156Right-handed alpha
Helix 5
5
A
170 187Right-handed alpha
Helix 6
6
A
198 200Right-handed 310
Helix 7
7
A
201 211Right-handed alpha
Helix 8
8
A
221 227Right-handed alpha
Helix 9
9
A
227 238Right-handed alpha
Helix 10
10
A
246 252Right-handed alpha
Helix 11
11
A
261 278Right-handed alpha
Helix 12
12
A
281 285Right-handed 310
Helix 13
13
A
298 305Right-handed alpha
Helix 14
14
A
310 317Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3LKV. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 69first strand
Strand 2
A
28 34parallel
Strand 3
A
91 95parallel
Strand 4
A
112 117parallel
Strand 5
A
136 140parallel
Strand 6
A
288 289parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 195first strand
Strand 2
A
161 166parallel
Strand 3
A
215 218parallel
Strand 4
A
242 244parallel
Strand 5
A
256 259parallel
Strand 6
A
294 297anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il