Analysis of interatomic Contacts of Structural Units in PDB entry:
3LL3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LL3 entry

There are 2 chains in PDB entry 3LL3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0SER 491
B
 LEU 1SER 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3LL3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
46 64Right-handed alpha
Helix 2
2
A
102 112Right-handed alpha
Helix 3
3
A
113 123Right-handed alpha
Helix 4
4
A
130 142Right-handed alpha
Helix 5
5
A
142 149Right-handed alpha
Helix 6
6
A
154 165Right-handed alpha
Helix 7
7
A
171 175Right-handed alpha
Helix 8
8
A
188 196Right-handed alpha
Helix 9
9
A
198 202Right-handed 310
Helix 10
10
A
216 224Right-handed alpha
Helix 11
11
A
237 244Right-handed alpha
Helix 12
12
A
297 309Right-handed alpha
Helix 13
13
A
314 324Right-handed alpha
Helix 14
14
A
328 332Right-handed 310
Helix 15
15
A
362 387Right-handed alpha
Helix 16
16
A
399 403Right-handed 310
Helix 17
17
A
404 416Right-handed alpha
Helix 18
18
A
426 440Right-handed alpha
Helix 19
19
A
445 452Right-handed 310
Helix 20
20
A
462 484Right-handed alpha
Helix 21
21
A
485 491Right-handed 310
Helix 22
22
B
46 63Right-handed alpha
Helix 23
23
B
102 112Right-handed alpha
Helix 24
24
B
113 123Right-handed alpha
Helix 25
25
B
130 142Right-handed alpha
Helix 26
26
B
142 149Right-handed alpha
Helix 27
27
B
154 165Right-handed alpha
Helix 28
28
B
171 175Right-handed alpha
Helix 29
29
B
188 196Right-handed alpha
Helix 30
30
B
198 202Right-handed 310
Helix 31
31
B
216 224Right-handed alpha
Helix 32
32
B
237 244Right-handed alpha
Helix 33
33
B
297 309Right-handed alpha
Helix 34
34
B
314 323Right-handed alpha
Helix 35
35
B
328 332Right-handed 310
Helix 36
36
B
362 387Right-handed alpha
Helix 37
37
B
399 403Right-handed 310
Helix 38
38
B
404 416Right-handed alpha
Helix 39
39
B
426 440Right-handed alpha
Helix 40
40
B
445 452Right-handed 310
Helix 41
41
B
462 484Right-handed alpha
Helix 42
42
B
486 491Right-handed 310
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There are 12 sheets in PDB entry 3LL3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 32first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
2 9anti-parallel
Strand 4
A
68 76parallel
Strand 5
A
230 236parallel
Strand 6
A
211 212anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
94 95anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
151 153anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
204 206parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 284first strand
Strand 2
A
287 294anti-parallel
Strand 3
A
261 267anti-parallel
Strand 4
A
252 257anti-parallel
Strand 5
A
394 398parallel
Strand 6
A
419 422parallel
Strand 7
A
455 459anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
352 357anti-parallel
Strand 3
B
352 357anti-parallel
Strand 4
B
333 335anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 32first strand
Strand 2
B
13 19anti-parallel
Strand 3
B
2 9anti-parallel
Strand 4
B
68 76parallel
Strand 5
B
230 232parallel
Strand 6
B
211 212anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 32first strand
Strand 2
B
13 19anti-parallel
Strand 3
B
2 9anti-parallel
Strand 4
B
68 76parallel
Strand 5
B
235 236parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
94 95anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
151 153anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 170first strand
Strand 2
B
204 206parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 284first strand
Strand 2
B
287 294anti-parallel
Strand 3
B
261 267anti-parallel
Strand 4
B
252 257anti-parallel
Strand 5
B
394 398parallel
Strand 6
B
419 422parallel
Strand 7
B
455 459anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il