Analysis of interatomic Contacts of Structural Units in PDB entry:
3LL5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LL5 entry

There are 4 chains in PDB entry 3LL5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 0ARG 245
B
 THR 0ARG 245
C
 ASP -3ARG 245
D
 PHE -1ARG 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3LL5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 12Right-handed alpha
Helix 2
2
A
21 34Right-handed alpha
Helix 3
3
A
45 48Right-handed 310
Helix 4
4
A
49 57Right-handed alpha
Helix 5
5
A
63 91Right-handed alpha
Helix 6
6
A
99 103Right-handed 310
Helix 7
7
A
111 120Right-handed alpha
Helix 8
8
A
142 155Right-handed alpha
Helix 9
9
A
202 214Right-handed alpha
Helix 10
10
A
227 234Right-handed 310
Helix 11
11
B
7 12Right-handed alpha
Helix 12
12
B
21 35Right-handed alpha
Helix 13
13
B
45 48Right-handed 310
Helix 14
14
B
49 57Right-handed alpha
Helix 15
15
B
63 91Right-handed alpha
Helix 16
16
B
99 103Right-handed 310
Helix 17
17
B
111 121Right-handed alpha
Helix 18
18
B
142 155Right-handed alpha
Helix 19
19
B
201 213Right-handed alpha
Helix 20
20
B
227 234Right-handed 310
Helix 21
21
C
7 12Right-handed alpha
Helix 22
22
C
21 33Right-handed alpha
Helix 23
23
C
45 56Right-handed alpha
Helix 24
24
C
63 91Right-handed alpha
Helix 25
25
C
99 103Right-handed 310
Helix 26
26
C
111 120Right-handed alpha
Helix 27
27
C
142 155Right-handed alpha
Helix 28
28
C
202 212Right-handed alpha
Helix 29
29
C
213 215Right-handed 310
Helix 30
30
C
227 234Right-handed 310
Helix 31
31
D
7 12Right-handed alpha
Helix 32
32
D
21 35Right-handed alpha
Helix 33
33
D
45 56Right-handed alpha
Helix 34
34
D
63 91Right-handed alpha
Helix 35
35
D
99 103Right-handed 310
Helix 36
36
D
111 120Right-handed alpha
Helix 37
37
D
142 155Right-handed alpha
Helix 38
38
D
202 213Right-handed alpha
Helix 39
39
D
214 216Right-handed 310
Helix 40
40
D
227 234Right-handed 310
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There are 8 sheets in PDB entry 3LL5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 97first strand
Strand 2
A
123 127parallel
Strand 3
A
38 43parallel
Strand 4
A
2 6parallel
Strand 5
A
158 163parallel
Strand 6
A
220 224parallel
Strand 7
A
242 245anti-parallel
Strand 8
A
184 186parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
129 134anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 97first strand
Strand 2
B
123 127parallel
Strand 3
B
38 43parallel
Strand 4
B
2 6parallel
Strand 5
B
158 163parallel
Strand 6
B
220 224parallel
Strand 7
B
242 244anti-parallel
Strand 8
B
184 185parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 61first strand
Strand 2
B
137 141anti-parallel
Strand 3
B
129 134anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 97first strand
Strand 2
C
123 127parallel
Strand 3
C
38 43parallel
Strand 4
C
2 6parallel
Strand 5
C
158 163parallel
Strand 6
C
220 224parallel
Strand 7
C
242 245anti-parallel
Strand 8
C
184 186parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 61first strand
Strand 2
C
137 141anti-parallel
Strand 3
C
129 134anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
95 97first strand
Strand 2
D
123 127parallel
Strand 3
D
38 43parallel
Strand 4
D
2 6parallel
Strand 5
D
158 163parallel
Strand 6
D
220 224parallel
Strand 7
D
242 244anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 61first strand
Strand 2
D
137 141anti-parallel
Strand 3
D
129 134anti-parallel
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