Analysis of interatomic Contacts of Structural Units in PDB entry:
3LLK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LLK entry

There are 3 chains in PDB entry 3LLK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 293LEU 542
B
 ASP 295LEU 542
C
 ALA 294ASP 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 3LLK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
301 314Right-handed alpha
Helix 2
2
A
315 319Right-handed 310
Helix 3
3
A
324 341Right-handed alpha
Helix 4
4
A
344 361Right-handed alpha
Helix 5
5
A
368 378Right-handed alpha
Helix 6
6
A
379 384Right-handed alpha
Helix 7
7
A
402 420Right-handed alpha
Helix 8
8
A
431 433Right-handed 310
Helix 9
9
A
434 447Right-handed alpha
Helix 10
10
A
449 464Right-handed alpha
Helix 11
11
A
465 467Right-handed 310
Helix 12
12
A
469 489Right-handed alpha
Helix 13
13
A
523 535Right-handed alpha
Helix 14
14
A
536 538Right-handed 310
Helix 15
15
B
301 314Right-handed alpha
Helix 16
16
B
315 319Right-handed 310
Helix 17
17
B
324 341Right-handed alpha
Helix 18
18
B
344 361Right-handed alpha
Helix 19
19
B
368 378Right-handed alpha
Helix 20
20
B
379 384Right-handed alpha
Helix 21
21
B
402 420Right-handed alpha
Helix 22
22
B
427 433Right-handed alpha
Helix 23
23
B
434 447Right-handed alpha
Helix 24
24
B
449 464Right-handed alpha
Helix 25
25
B
465 467Right-handed 310
Helix 26
26
B
469 489Right-handed alpha
Helix 27
27
B
523 535Right-handed alpha
Helix 28
28
B
536 538Right-handed 310
Helix 29
29
C
301 314Right-handed alpha
Helix 30
30
C
315 319Right-handed 310
Helix 31
31
C
323 341Right-handed alpha
Helix 32
32
C
344 361Right-handed alpha
Helix 33
33
C
368 378Right-handed alpha
Helix 34
34
C
379 384Right-handed alpha
Helix 35
35
C
402 419Right-handed alpha
Helix 36
36
C
431 433Right-handed 310
Helix 37
37
C
434 446Right-handed alpha
Helix 38
38
C
449 464Right-handed alpha
Helix 39
39
C
465 467Right-handed 310
Helix 40
40
C
469 489Right-handed alpha
Helix 41
41
C
523 535Right-handed alpha
Helix 42
42
C
536 538Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 3LLK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
540 541parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
365 367anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
540 541parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 323first strand
Strand 2
B
365 367anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
299 300first strand
Strand 2
C
540 541parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
321 322first strand
Strand 2
C
366 367anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il