Analysis of interatomic Contacts of Structural Units in PDB entry:
3LM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LM2 entry

There are 2 chains in PDB entry 3LM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1VAL 225
B
 ASP 4VAL 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3LM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 5Right-handed 310
Helix 2
2
A
37 49Right-handed alpha
Helix 3
3
A
85 91Right-handed alpha
Helix 4
4
A
99 108Right-handed alpha
Helix 5
5
A
148 152Right-handed alpha
Helix 6
6
A
153 161Right-handed alpha
Helix 7
7
A
161 181Right-handed alpha
Helix 8
8
A
189 195Right-handed 310
Helix 9
9
A
208 220Right-handed alpha
Helix 10
10
B
37 49Right-handed alpha
Helix 11
11
B
85 91Right-handed alpha
Helix 12
12
B
99 108Right-handed alpha
Helix 13
13
B
148 153Right-handed alpha
Helix 14
14
B
153 161Right-handed alpha
Helix 15
15
B
161 181Right-handed alpha
Helix 16
16
B
191 195Right-handed 310
Helix 17
17
B
208 220Right-handed alpha
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There are 8 sheets in PDB entry 3LM2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
7 12anti-parallel
Strand 4
A
56 61parallel
Strand 5
A
94 98parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
69 70anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
122 128anti-parallel
Strand 3
A
112 118anti-parallel
Strand 4
A
184 188parallel
Strand 5
A
202 204parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
146 147anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
16 21anti-parallel
Strand 3
B
7 12anti-parallel
Strand 4
B
56 61parallel
Strand 5
B
94 98parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
69 70anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
122 128anti-parallel
Strand 3
B
112 118anti-parallel
Strand 4
B
184 188parallel
Strand 5
B
202 204parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 143first strand
Strand 2
B
146 147anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il