Analysis of interatomic Contacts of Structural Units in PDB entry:
3LM3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LM3 entry

There is 1 chain in PDB entry 3LM3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 41LEU 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3LM3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 79Right-handed 310
Helix 2
2
A
80 93Right-handed alpha
Helix 3
3
A
105 111Right-handed alpha
Helix 4
4
A
113 131Right-handed alpha
Helix 5
5
A
141 146Right-handed alpha
Helix 6
6
A
147 167Right-handed alpha
Helix 7
7
A
181 192Right-handed alpha
Helix 8
8
A
233 237Right-handed 310
Helix 9
9
A
249 254Right-handed alpha
Helix 10
10
A
277 282Right-handed alpha
Helix 11
11
A
282 299Right-handed alpha
Helix 12
12
A
299 306Right-handed alpha
Helix 13
13
A
317 323Right-handed alpha
Helix 14
14
A
323 342Right-handed alpha
Helix 15
15
A
349 361Right-handed alpha
Helix 16
16
A
449 453Right-handed 310
Helix 17
17
A
456 460Right-handed 310
Helix 18
18
A
461 472Right-handed alpha
Helix 19
19
A
473 476Right-handed 310
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There are 5 sheets in PDB entry 3LM3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
101 104parallel
Strand 3
A
49 57parallel
Strand 4
A
308 315parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
101 104parallel
Strand 3
A
49 57parallel
Strand 4
A
346 348parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
196 200parallel
Strand 3
A
241 244parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
226 230anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 374first strand
Strand 2
A
385 391anti-parallel
Strand 3
A
395 402anti-parallel
Strand 4
A
411 417anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il