Analysis of interatomic Contacts of Structural Units in PDB entry:
3LM6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LM6 entry

There are 2 chains in PDB entry 3LM6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ALA 334
B
 MSE 1ALA 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 3LM6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 30Right-handed alpha
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
50 70Right-handed alpha
Helix 4
4
A
73 77Right-handed 310
Helix 5
5
A
86 88Right-handed 310
Helix 6
6
A
89 100Right-handed alpha
Helix 7
7
A
108 110Right-handed 310
Helix 8
8
A
111 126Right-handed alpha
Helix 9
9
A
141 147Right-handed alpha
Helix 10
10
A
150 154Right-handed 310
Helix 11
11
A
200 220Right-handed alpha
Helix 12
12
A
223 227Right-handed 310
Helix 13
13
A
235 250Right-handed alpha
Helix 14
14
A
254 256Right-handed 310
Helix 15
15
A
261 265Right-handed alpha
Helix 16
16
A
278 296Right-handed alpha
Helix 17
17
A
312 317Right-handed alpha
Helix 18
18
B
25 30Right-handed alpha
Helix 19
19
B
33 37Right-handed 310
Helix 20
20
B
50 70Right-handed alpha
Helix 21
21
B
73 77Right-handed 310
Helix 22
22
B
86 88Right-handed 310
Helix 23
23
B
89 100Right-handed alpha
Helix 24
24
B
108 110Right-handed 310
Helix 25
25
B
111 126Right-handed alpha
Helix 26
26
B
139 145Right-handed alpha
Helix 27
27
B
200 220Right-handed alpha
Helix 28
28
B
223 227Right-handed 310
Helix 29
29
B
235 250Right-handed alpha
Helix 30
30
B
254 256Right-handed 310
Helix 31
31
B
261 265Right-handed alpha
Helix 32
32
B
278 296Right-handed alpha
Helix 33
33
B
312 317Right-handed alpha
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There are 6 sheets in PDB entry 3LM6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
8 24anti-parallel
Strand 3
A
167 174anti-parallel
Strand 4
A
131 138anti-parallel
Strand 5
A
79 84parallel
Strand 6
A
103 105parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
8 24parallel
Strand 3
A
180 186anti-parallel
Strand 4
A
324 333anti-parallel
Strand 5
A
301 309anti-parallel
Strand 6
A
229 232parallel
Strand 7
A
258 260parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
276 277parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
8 24anti-parallel
Strand 3
B
167 174anti-parallel
Strand 4
B
131 138anti-parallel
Strand 5
B
79 84parallel
Strand 6
B
103 105parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
8 24parallel
Strand 3
B
180 186anti-parallel
Strand 4
B
324 333anti-parallel
Strand 5
B
301 309anti-parallel
Strand 6
B
229 232parallel
Strand 7
B
258 260parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
276 277parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il