Analysis of interatomic Contacts of Structural Units in PDB entry:
3LM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LM7 entry

There are 2 chains in PDB entry 3LM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2GLN 246
B
 MSE 1GLN 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3LM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
20 31Right-handed alpha
Helix 3
3
A
42 44Right-handed 310
Helix 4
4
A
46 61Right-handed alpha
Helix 5
5
A
73 75Right-handed 310
Helix 6
6
A
76 88Right-handed alpha
Helix 7
7
A
95 97Right-handed 310
Helix 8
8
A
98 107Right-handed alpha
Helix 9
9
A
133 137Right-handed 310
Helix 10
10
A
144 154Right-handed alpha
Helix 11
11
A
169 183Right-handed alpha
Helix 12
12
A
197 209Right-handed alpha
Helix 13
13
A
218 222Right-handed 310
Helix 14
14
A
230 245Right-handed alpha
Helix 15
15
B
7 11Right-handed 310
Helix 16
16
B
20 31Right-handed alpha
Helix 17
17
B
42 44Right-handed 310
Helix 18
18
B
46 61Right-handed alpha
Helix 19
19
B
73 75Right-handed 310
Helix 20
20
B
76 88Right-handed alpha
Helix 21
21
B
95 97Right-handed 310
Helix 22
22
B
98 107Right-handed alpha
Helix 23
23
B
133 137Right-handed 310
Helix 24
24
B
144 154Right-handed alpha
Helix 25
25
B
169 183Right-handed alpha
Helix 26
26
B
197 209Right-handed alpha
Helix 27
27
B
218 222Right-handed 310
Helix 28
28
B
230 245Right-handed alpha
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There are 4 sheets in PDB entry 3LM7. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
35 40parallel
Strand 3
A
65 68parallel
Strand 4
A
91 92parallel
Strand 5
A
112 117parallel
Strand 6
A
158 161parallel
Strand 7
A
186 189parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
141 143anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
35 40parallel
Strand 3
B
65 68parallel
Strand 4
B
91 92parallel
Strand 5
B
112 119parallel
Strand 6
B
125 127anti-parallel
Strand 7
B
141 143anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
35 40parallel
Strand 3
B
65 68parallel
Strand 4
B
91 92parallel
Strand 5
B
112 119parallel
Strand 6
B
158 161parallel
Strand 7
B
186 189parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il