Analysis of interatomic Contacts of Structural Units in PDB entry:
3LM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LM8 entry

There are 4 chains in PDB entry 3LM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 215
B
 LYS 2LEU 215
C
 LYS 2LEU 215
D
 LYS 2LEU 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3LM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
32 42Right-handed alpha
Helix 4
4
A
56 67Right-handed alpha
Helix 5
5
A
80 93Right-handed alpha
Helix 6
6
A
106 123Right-handed alpha
Helix 7
7
B
11 15Right-handed 310
Helix 8
8
B
17 22Right-handed 310
Helix 9
9
B
33 41Right-handed alpha
Helix 10
10
B
56 67Right-handed alpha
Helix 11
11
B
80 92Right-handed alpha
Helix 12
12
B
106 123Right-handed alpha
Helix 13
13
C
11 15Right-handed 310
Helix 14
14
C
17 22Right-handed 310
Helix 15
15
C
33 41Right-handed alpha
Helix 16
16
C
56 67Right-handed alpha
Helix 17
17
C
80 92Right-handed alpha
Helix 18
18
C
106 122Right-handed alpha
Helix 19
19
D
11 15Right-handed 310
Helix 20
20
D
17 22Right-handed 310
Helix 21
21
D
32 40Right-handed alpha
Helix 22
22
D
56 67Right-handed alpha
Helix 23
23
D
80 92Right-handed alpha
Helix 24
24
D
106 122Right-handed alpha
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There are 8 sheets in PDB entry 3LM8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
47 49parallel
Strand 3
A
26 31parallel
Strand 4
A
3 7parallel
Strand 5
A
96 100parallel
Strand 6
A
126 131parallel
Strand 7
A
134 139anti-parallel
Strand 8
A
207 212anti-parallel
Strand 9
A
154 159anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
164 170anti-parallel
Strand 4
A
176 181anti-parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
47 49parallel
Strand 3
B
26 31parallel
Strand 4
B
3 7parallel
Strand 5
B
96 100parallel
Strand 6
B
126 131parallel
Strand 7
B
134 139anti-parallel
Strand 8
B
207 212anti-parallel
Strand 9
B
154 159anti-parallel
Strand 10
B
191 192anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 147first strand
Strand 2
B
197 202anti-parallel
Strand 3
B
164 170anti-parallel
Strand 4
B
176 181anti-parallel
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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 73first strand
Strand 2
C
47 49parallel
Strand 3
C
26 31parallel
Strand 4
C
3 7parallel
Strand 5
C
96 100parallel
Strand 6
C
126 131parallel
Strand 7
C
134 139anti-parallel
Strand 8
C
207 212anti-parallel
Strand 9
C
154 159anti-parallel
Strand 10
C
191 192anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 147first strand
Strand 2
C
197 202anti-parallel
Strand 3
C
164 170anti-parallel
Strand 4
C
176 181anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 73first strand
Strand 2
D
47 49parallel
Strand 3
D
26 31parallel
Strand 4
D
3 7parallel
Strand 5
D
96 100parallel
Strand 6
D
126 131parallel
Strand 7
D
134 139anti-parallel
Strand 8
D
207 212anti-parallel
Strand 9
D
154 159anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
142 147first strand
Strand 2
D
197 202anti-parallel
Strand 3
D
164 170anti-parallel
Strand 4
D
176 181anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il