Analysis of interatomic Contacts of Structural Units in PDB entry:
3LM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LM9 entry

There are 2 chains in PDB entry 3LM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0PRO 222
A
 ILE 225ALA 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 3LM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 46Right-handed alpha
Helix 2
2
A
85 95Right-handed alpha
Helix 3
3
A
103 115Right-handed alpha
Helix 4
4
A
150 154Right-handed 310
Helix 5
5
A
174 180Right-handed alpha
Helix 6
6
A
180 189Right-handed alpha
Helix 7
7
A
191 195Right-handed 310
Helix 8
8
A
198 220Right-handed alpha
Helix 9
9
A
230 234Right-handed 310
Helix 10
10
A
235 250Right-handed alpha
Helix 11
11
A
255 259Right-handed 310
Helix 12
12
A
261 264Right-handed 310
Helix 13
13
A
271 273Right-handed 310
Helix 14
14
A
274 293Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3LM9. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 30first strand
Strand 2
A
11 17anti-parallel
Strand 3
A
2 7anti-parallel
Strand 4
A
52 57parallel
Strand 5
A
98 102parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
132 138anti-parallel
Strand 3
A
123 128anti-parallel
Strand 4
A
225 228parallel
Strand 5
A
266 267parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il