Analysis of interatomic Contacts of Structural Units in PDB entry:
3LMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LMB entry

There are 2 chains in PDB entry 3LMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ASN 164
B
 ASN 2ASN 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3LMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 22Right-handed alpha
Helix 2
2
A
22 29Right-handed alpha
Helix 3
3
A
46 50Right-handed 310
Helix 4
4
A
57 80Right-handed alpha
Helix 5
5
A
111 126Right-handed alpha
Helix 6
6
B
6 22Right-handed alpha
Helix 7
7
B
22 28Right-handed alpha
Helix 8
8
B
46 50Right-handed 310
Helix 9
9
B
57 80Right-handed alpha
Helix 10
10
B
111 126Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3LMB.

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
127 137anti-parallel
Strand 5
A
153 162anti-parallel
Strand 6
A
85 95anti-parallel
Strand 7
B
85 95anti-parallel
Strand 8
B
153 162anti-parallel
Strand 9
B
127 136anti-parallel
Strand 10
B
103 108anti-parallel
Strand 11
B
39 44anti-parallel
Strand 12
B
31 35anti-parallel
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