Analysis of interatomic Contacts of Structural Units in PDB entry:
3LMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LMD entry

There is 1 chain in PDB entry 3LMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 18HIS 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3LMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 26Right-handed alpha
Helix 2
2
A
31 54Right-handed alpha
Helix 3
3
A
57 68Right-handed alpha
Helix 4
4
A
74 85Right-handed alpha
Helix 5
5
A
92 117Right-handed alpha
Helix 6
6
A
129 156Right-handed alpha
Helix 7
7
A
156 180Right-handed alpha
Helix 8
8
A
185 198Right-handed alpha
Helix 9
9
A
198 213Right-handed alpha
Helix 10
10
A
216 245Right-handed alpha
Helix 11
11
A
255 261Right-handed alpha
Helix 12
12
A
264 273Right-handed alpha
Helix 13
13
A
275 285Right-handed alpha
Helix 14
14
A
291 305Right-handed alpha
Helix 15
15
A
306 327Right-handed alpha
Helix 16
16
A
332 348Right-handed alpha
Back to top of page
There are no sheets in PDB entry 3LMD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il