Analysis of interatomic Contacts of Structural Units in PDB entry:
3LME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LME entry

There are 12 chains in PDB entry 3LME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 28ALA 156
B
 SER 28ALA 156
C
 SER 28ALA 154
D
 SER 28ALA 156
E
 SER 28ALA 156
F
 SER 28ALA 154
G
 SER 28ALA 156
H
 SER 28ALA 156
I
 SER 28PRO 155
J
 SER 28ALA 156
K
 SER 28ALA 156
L
 SER 28PRO 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3LME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
73 91Right-handed alpha
Helix 2
2
A
95 97Right-handed 310
Helix 3
3
A
108 125Right-handed alpha
Helix 4
4
A
140 144Right-handed 310
Helix 5
5
B
73 91Right-handed alpha
Helix 6
6
B
95 97Right-handed 310
Helix 7
7
B
108 125Right-handed alpha
Helix 8
8
B
140 144Right-handed 310
Helix 9
9
C
73 92Right-handed alpha
Helix 10
10
C
95 97Right-handed 310
Helix 11
11
C
108 125Right-handed alpha
Helix 12
12
C
140 144Right-handed 310
Helix 13
13
D
73 92Right-handed alpha
Helix 14
14
D
95 97Right-handed 310
Helix 15
15
D
108 125Right-handed alpha
Helix 16
16
D
140 144Right-handed 310
Helix 17
17
E
73 92Right-handed alpha
Helix 18
18
E
95 97Right-handed 310
Helix 19
19
E
108 125Right-handed alpha
Helix 20
20
E
140 144Right-handed 310
Helix 21
21
F
73 91Right-handed alpha
Helix 22
22
F
95 97Right-handed 310
Helix 23
23
F
108 125Right-handed alpha
Helix 24
24
F
140 144Right-handed 310
Helix 25
25
G
73 91Right-handed alpha
Helix 26
26
G
95 97Right-handed 310
Helix 27
27
G
108 125Right-handed alpha
Helix 28
28
G
140 144Right-handed 310
Helix 29
29
H
73 92Right-handed alpha
Helix 30
30
H
95 97Right-handed 310
Helix 31
31
H
108 125Right-handed alpha
Helix 32
32
H
140 144Right-handed 310
Helix 33
33
I
73 92Right-handed alpha
Helix 34
34
I
95 97Right-handed 310
Helix 35
35
I
108 125Right-handed alpha
Helix 36
36
I
140 144Right-handed 310
Helix 37
37
J
73 91Right-handed alpha
Helix 38
38
J
95 97Right-handed 310
Helix 39
39
J
108 125Right-handed alpha
Helix 40
40
J
140 144Right-handed 310
Helix 41
41
K
73 91Right-handed alpha
Helix 42
42
K
95 97Right-handed 310
Helix 43
43
K
108 125Right-handed alpha
Helix 44
44
K
140 144Right-handed 310
Helix 45
45
L
73 91Right-handed alpha
Helix 46
46
L
95 97Right-handed 310
Helix 47
47
L
108 125Right-handed alpha
Helix 48
48
L
140 144Right-handed 310
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There are 12 sheets in PDB entry 3LME. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
48 51anti-parallel
Strand 3
A
54 61anti-parallel
Strand 4
A
146 153anti-parallel
Strand 5
A
99 106anti-parallel
Strand 6
A
132 136parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
48 51anti-parallel
Strand 3
B
54 57anti-parallel
Strand 4
B
146 153anti-parallel
Strand 5
B
99 106anti-parallel
Strand 6
B
132 136parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 31first strand
Strand 2
C
48 51anti-parallel
Strand 3
C
54 60anti-parallel
Strand 4
C
146 153anti-parallel
Strand 5
C
99 106anti-parallel
Strand 6
C
132 136parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 31first strand
Strand 2
D
48 51anti-parallel
Strand 3
D
54 60anti-parallel
Strand 4
D
146 153anti-parallel
Strand 5
D
99 106anti-parallel
Strand 6
D
132 136parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
30 31first strand
Strand 2
E
48 51anti-parallel
Strand 3
E
54 60anti-parallel
Strand 4
E
146 153anti-parallel
Strand 5
E
99 106anti-parallel
Strand 6
E
132 136parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
30 31first strand
Strand 2
F
48 51anti-parallel
Strand 3
F
54 61anti-parallel
Strand 4
F
146 153anti-parallel
Strand 5
F
99 106anti-parallel
Strand 6
F
132 136parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
30 31first strand
Strand 2
G
48 51anti-parallel
Strand 3
G
54 60anti-parallel
Strand 4
G
146 153anti-parallel
Strand 5
G
99 106anti-parallel
Strand 6
G
132 136parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
30 31first strand
Strand 2
H
48 51anti-parallel
Strand 3
H
54 60anti-parallel
Strand 4
H
146 153anti-parallel
Strand 5
H
99 106anti-parallel
Strand 6
H
132 136parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
30 31first strand
Strand 2
I
48 51anti-parallel
Strand 3
I
54 60anti-parallel
Strand 4
I
146 153anti-parallel
Strand 5
I
99 106anti-parallel
Strand 6
I
132 136parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
30 31first strand
Strand 2
J
48 51anti-parallel
Strand 3
J
54 57anti-parallel
Strand 4
J
146 153anti-parallel
Strand 5
J
99 106anti-parallel
Strand 6
J
132 136parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
30 31first strand
Strand 2
K
48 51anti-parallel
Strand 3
K
54 60anti-parallel
Strand 4
K
146 153anti-parallel
Strand 5
K
99 106anti-parallel
Strand 6
K
132 136parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
30 31first strand
Strand 2
L
48 51anti-parallel
Strand 3
L
54 60anti-parallel
Strand 4
L
146 153anti-parallel
Strand 5
L
99 106anti-parallel
Strand 6
L
132 136parallel
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