Analysis of interatomic Contacts of Structural Units in PDB entry:
3LMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LMG entry

There are 2 chains in PDB entry 3LMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 680ILE 959
B
 VAL 680ILE 959
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3LMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
686 688Right-handed 310
Helix 2
2
A
738 747Right-handed alpha
Helix 3
3
A
775 784Right-handed alpha
Helix 4
4
A
785 787Right-handed 310
Helix 5
5
A
788 809Right-handed alpha
Helix 6
6
A
836 840Right-handed 310
Helix 7
7
A
854 859Right-handed 310
Helix 8
8
A
860 867Right-handed alpha
Helix 9
9
A
870 887Right-handed alpha
Helix 10
10
A
900 907Right-handed alpha
Helix 11
11
A
918 929Right-handed alpha
Helix 12
12
A
932 936Right-handed 310
Helix 13
13
A
938 951Right-handed alpha
Helix 14
14
A
952 957Right-handed alpha
Helix 15
15
B
686 688Right-handed 310
Helix 16
16
B
738 745Right-handed alpha
Helix 17
17
B
775 784Right-handed alpha
Helix 18
18
B
785 787Right-handed 310
Helix 19
19
B
788 809Right-handed alpha
Helix 20
20
B
817 819Right-handed 310
Helix 21
21
B
835 840Right-handed 310
Helix 22
22
B
855 859Right-handed 310
Helix 23
23
B
860 867Right-handed alpha
Helix 24
24
B
870 887Right-handed alpha
Helix 25
25
B
899 907Right-handed alpha
Helix 26
26
B
918 929Right-handed alpha
Helix 27
27
B
938 951Right-handed alpha
Helix 28
28
B
952 957Right-handed alpha
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There are 4 sheets in PDB entry 3LMG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
690 698first strand
Strand 2
A
702 709anti-parallel
Strand 3
A
718 725anti-parallel
Strand 4
A
764 769anti-parallel
Strand 5
A
755 759anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
821 825first strand
Strand 2
A
828 831anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
690 698first strand
Strand 2
B
702 709anti-parallel
Strand 3
B
718 725anti-parallel
Strand 4
B
764 769anti-parallel
Strand 5
B
755 759anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
821 823first strand
Strand 2
B
829 831anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il