Analysis of interatomic Contacts of Structural Units in PDB entry:
3LMI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3LMI entry

There are 4 chains in PDB entry 3LMI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 556	LYS 808
B	ILE 552	LEU 809
C	ILE 552	LYS 808
D	ILE 552	LEU 809

There are 26 helices in PDB entry 3LMI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	567	570	Right-handed 310
Helix 2	2	A	619	623	Right-handed 310
Helix 3	3	A	631	636	Right-handed alpha
Helix 4	4	A	656	680	Right-handed alpha
Helix 5	5	A	735	748	Right-handed alpha
Helix 6	6	A	782	794	Right-handed alpha
Helix 7	7	A	797	803	Right-handed alpha
Helix 8	8	B	619	623	Right-handed 310
Helix 9	9	B	631	636	Right-handed alpha
Helix 10	10	B	656	680	Right-handed alpha
Helix 11	11	B	702	706	Right-handed 310
Helix 12	12	B	735	748	Right-handed alpha
Helix 13	13	B	782	794	Right-handed alpha
Helix 14	14	B	797	803	Right-handed alpha
Helix 15	15	C	619	623	Right-handed 310
Helix 16	16	C	631	636	Right-handed alpha
Helix 17	17	C	656	679	Right-handed alpha
Helix 18	18	C	735	748	Right-handed alpha
Helix 19	19	C	782	794	Right-handed alpha
Helix 20	20	C	797	803	Right-handed alpha
Helix 21	21	D	619	623	Right-handed 310
Helix 22	22	D	631	636	Right-handed alpha
Helix 23	23	D	656	680	Right-handed alpha
Helix 24	24	D	735	748	Right-handed alpha
Helix 25	25	D	782	794	Right-handed alpha
Helix 26	26	D	797	803	Right-handed alpha

There are 12 sheets in PDB entry 3LMI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	588	first strand
Strand 2	A	592	604	anti-parallel
Strand 3	A	641	647	anti-parallel
Strand 4	A	709	714	anti-parallel
Strand 5	A	692	695	anti-parallel
Strand 6	A	558	566	anti-parallel
Strand 7	A	571	581	anti-parallel
Strand 8	A	592	604	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	687	688	first strand
Strand 2	A	763	764	parallel
Strand 3	A	758	760	anti-parallel
Strand 4	A	720	722	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	755	first strand
Strand 2	A	768	770	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	587	588	first strand
Strand 2	B	592	604	anti-parallel
Strand 3	B	641	647	anti-parallel
Strand 4	B	709	714	anti-parallel
Strand 5	B	692	695	anti-parallel
Strand 6	B	558	566	anti-parallel
Strand 7	B	571	581	anti-parallel
Strand 8	B	592	604	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	687	688	first strand
Strand 2	B	763	764	parallel
Strand 3	B	758	760	anti-parallel
Strand 4	B	721	722	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	755	first strand
Strand 2	B	768	770	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	587	588	first strand
Strand 2	C	592	604	anti-parallel
Strand 3	C	641	647	anti-parallel
Strand 4	C	709	714	anti-parallel
Strand 5	C	692	695	anti-parallel
Strand 6	C	558	566	anti-parallel
Strand 7	C	571	581	anti-parallel
Strand 8	C	592	604	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	687	688	first strand
Strand 2	C	763	764	parallel
Strand 3	C	758	760	anti-parallel
Strand 4	C	721	722	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	753	755	first strand
Strand 2	C	768	770	anti-parallel

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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	587	588	first strand
Strand 2	D	592	604	anti-parallel
Strand 3	D	641	647	anti-parallel
Strand 4	D	709	714	anti-parallel
Strand 5	D	692	695	anti-parallel
Strand 6	D	558	566	anti-parallel
Strand 7	D	571	581	anti-parallel
Strand 8	D	592	604	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	687	688	first strand
Strand 2	D	763	764	parallel
Strand 3	D	758	760	anti-parallel
Strand 4	D	721	722	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	753	755	first strand
Strand 2	D	768	770	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3LMI

Analysis of interatomic Contacts of Structural Units in PDB entry:
3LMI