Analysis of interatomic Contacts of Structural Units in PDB entry:
3LML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3LML entry

There are 6 chains in PDB entry 3LML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 16	HIS 455
B	TYR 19	LEU 453
C	GLY 17	GLU 454
D	THR 20	LEU 453
E	ASN 21	VAL 451
F	THR 20	GLU 454

There are 84 helices in PDB entry 3LML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	17	29	Right-handed alpha
Helix 2	2	A	57	66	Right-handed alpha
Helix 3	3	A	71	73	Right-handed 310
Helix 4	4	A	74	82	Right-handed alpha
Helix 5	5	A	114	118	Right-handed 310
Helix 6	6	A	152	156	Right-handed 310
Helix 7	7	A	189	200	Right-handed alpha
Helix 8	8	A	201	203	Right-handed 310
Helix 9	9	A	216	233	Right-handed alpha
Helix 10	10	A	268	283	Right-handed alpha
Helix 11	11	A	305	315	Right-handed alpha
Helix 12	12	A	346	350	Right-handed 310
Helix 13	13	A	351	377	Right-handed alpha
Helix 14	14	A	386	407	Right-handed alpha
Helix 15	15	B	21	29	Right-handed alpha
Helix 16	16	B	57	66	Right-handed alpha
Helix 17	17	B	71	73	Right-handed 310
Helix 18	18	B	74	82	Right-handed alpha
Helix 19	19	B	114	118	Right-handed 310
Helix 20	20	B	152	156	Right-handed 310
Helix 21	21	B	189	200	Right-handed alpha
Helix 22	22	B	201	203	Right-handed 310
Helix 23	23	B	216	233	Right-handed alpha
Helix 24	24	B	268	283	Right-handed alpha
Helix 25	25	B	305	315	Right-handed alpha
Helix 26	26	B	346	350	Right-handed 310
Helix 27	27	B	351	377	Right-handed alpha
Helix 28	28	B	386	407	Right-handed alpha
Helix 29	29	C	18	27	Right-handed alpha
Helix 30	30	C	57	66	Right-handed alpha
Helix 31	31	C	71	73	Right-handed 310
Helix 32	32	C	74	82	Right-handed alpha
Helix 33	33	C	114	118	Right-handed 310
Helix 34	34	C	152	156	Right-handed 310
Helix 35	35	C	189	200	Right-handed alpha
Helix 36	36	C	201	203	Right-handed 310
Helix 37	37	C	216	233	Right-handed alpha
Helix 38	38	C	268	283	Right-handed alpha
Helix 39	39	C	305	315	Right-handed alpha
Helix 40	40	C	346	350	Right-handed 310
Helix 41	41	C	351	377	Right-handed alpha
Helix 42	42	C	386	407	Right-handed alpha
Helix 43	43	D	22	26	Right-handed 310
Helix 44	44	D	57	66	Right-handed alpha
Helix 45	45	D	71	73	Right-handed 310
Helix 46	46	D	74	82	Right-handed alpha
Helix 47	47	D	114	118	Right-handed 310
Helix 48	48	D	152	156	Right-handed 310
Helix 49	49	D	189	200	Right-handed alpha
Helix 50	50	D	201	203	Right-handed 310
Helix 51	51	D	216	233	Right-handed alpha
Helix 52	52	D	268	283	Right-handed alpha
Helix 53	53	D	305	315	Right-handed alpha
Helix 54	54	D	346	350	Right-handed 310
Helix 55	55	D	351	377	Right-handed alpha
Helix 56	56	D	386	407	Right-handed alpha
Helix 57	57	E	25	31	Right-handed alpha
Helix 58	58	E	57	66	Right-handed alpha
Helix 59	59	E	71	73	Right-handed 310
Helix 60	60	E	74	82	Right-handed alpha
Helix 61	61	E	114	118	Right-handed 310
Helix 62	62	E	152	156	Right-handed 310
Helix 63	63	E	189	200	Right-handed alpha
Helix 64	64	E	201	203	Right-handed 310
Helix 65	65	E	216	233	Right-handed alpha
Helix 66	66	E	268	283	Right-handed alpha
Helix 67	67	E	305	315	Right-handed alpha
Helix 68	68	E	346	350	Right-handed 310
Helix 69	69	E	351	377	Right-handed alpha
Helix 70	70	E	386	407	Right-handed alpha
Helix 71	71	F	20	31	Right-handed alpha
Helix 72	72	F	57	66	Right-handed alpha
Helix 73	73	F	71	73	Right-handed 310
Helix 74	74	F	74	82	Right-handed alpha
Helix 75	75	F	114	118	Right-handed 310
Helix 76	76	F	152	156	Right-handed 310
Helix 77	77	F	189	200	Right-handed alpha
Helix 78	78	F	201	203	Right-handed 310
Helix 79	79	F	216	233	Right-handed alpha
Helix 80	80	F	268	283	Right-handed alpha
Helix 81	81	F	305	315	Right-handed alpha
Helix 82	82	F	347	350	Right-handed 310
Helix 83	83	F	351	377	Right-handed alpha
Helix 84	84	F	386	407	Right-handed alpha

There are 42 sheets in PDB entry 3LML. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	84	91	anti-parallel
Strand 3	A	35	42	parallel
Strand 4	A	207	209	parallel
Strand 5	A	239	243	parallel
Strand 6	A	252	255	parallel

Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	184	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	104	110	anti-parallel
Strand 3	A	162	171	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	150	first strand
Strand 2	A	134	140	anti-parallel
Strand 3	A	120	126	anti-parallel
Strand 4	A	178	179	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	259	261	anti-parallel
Strand 3	A	297	299	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	323	first strand
Strand 2	A	328	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	423	first strand
Strand 2	A	429	436	anti-parallel
Strand 3	A	445	452	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	86	91	anti-parallel
Strand 3	B	37	42	parallel
Strand 4	B	207	209	parallel
Strand 5	B	239	243	parallel
Strand 6	B	252	255	parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	184	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	104	110	anti-parallel
Strand 3	B	162	171	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	150	first strand
Strand 2	B	134	140	anti-parallel
Strand 3	B	120	126	anti-parallel
Strand 4	B	178	179	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	259	261	anti-parallel
Strand 3	B	297	299	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	320	323	first strand
Strand 2	B	328	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	423	first strand
Strand 2	B	429	436	anti-parallel
Strand 3	B	445	452	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	55	first strand
Strand 2	C	84	91	anti-parallel
Strand 3	C	35	42	parallel
Strand 4	C	207	209	parallel
Strand 5	C	239	243	parallel
Strand 6	C	252	255	parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	184	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	104	110	anti-parallel
Strand 3	C	162	171	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	150	first strand
Strand 2	C	134	140	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	178	179	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	267	first strand
Strand 2	C	259	261	anti-parallel
Strand 3	C	297	299	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	320	323	first strand
Strand 2	C	328	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	423	first strand
Strand 2	C	429	436	anti-parallel
Strand 3	C	445	452	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	55	first strand
Strand 2	D	86	91	anti-parallel
Strand 3	D	37	42	parallel
Strand 4	D	207	209	parallel
Strand 5	D	239	243	parallel
Strand 6	D	252	255	parallel

Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	184	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	102	first strand
Strand 2	D	104	110	anti-parallel
Strand 3	D	162	171	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	150	first strand
Strand 2	D	134	140	anti-parallel
Strand 3	D	120	126	anti-parallel
Strand 4	D	178	179	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	259	261	anti-parallel
Strand 3	D	297	299	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	320	323	first strand
Strand 2	D	328	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	423	first strand
Strand 2	D	430	436	anti-parallel
Strand 3	D	445	451	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	55	first strand
Strand 2	E	84	91	anti-parallel
Strand 3	E	35	42	parallel
Strand 4	E	207	209	parallel
Strand 5	E	239	243	parallel
Strand 6	E	252	255	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	96	first strand
Strand 2	E	184	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	104	110	anti-parallel
Strand 3	E	162	171	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	150	first strand
Strand 2	E	134	140	anti-parallel
Strand 3	E	120	126	anti-parallel
Strand 4	E	178	179	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	267	first strand
Strand 2	E	258	261	anti-parallel
Strand 3	E	297	301	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	320	323	first strand
Strand 2	E	328	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	419	423	first strand
Strand 2	E	430	436	anti-parallel
Strand 3	E	445	450	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	55	first strand
Strand 2	F	86	91	anti-parallel
Strand 3	F	37	42	parallel
Strand 4	F	207	209	parallel
Strand 5	F	239	243	parallel
Strand 6	F	252	255	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	96	first strand
Strand 2	F	184	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	102	first strand
Strand 2	F	104	110	anti-parallel
Strand 3	F	162	171	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	150	first strand
Strand 2	F	134	140	anti-parallel
Strand 3	F	120	126	anti-parallel
Strand 4	F	178	179	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	267	first strand
Strand 2	F	259	261	anti-parallel
Strand 3	F	297	299	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	320	323	first strand
Strand 2	F	328	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	419	423	first strand
Strand 2	F	429	436	anti-parallel
Strand 3	F	445	452	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3LML

Analysis of interatomic Contacts of Structural Units in PDB entry:
3LML