Analysis of interatomic Contacts of Structural Units in PDB entry:
3LMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3LMM entry

There are 4 chains in PDB entry 3LMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 9	GLU 500
B	GLU 9	VAL 574
C	GLU 9	LEU 496
D	GLU 9	GLU 575

There are 88 helices in PDB entry 3LMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	25	Right-handed alpha
Helix 2	2	A	34	38	Right-handed 310
Helix 3	3	A	61	78	Right-handed alpha
Helix 4	4	A	101	114	Right-handed alpha
Helix 5	5	A	160	172	Right-handed alpha
Helix 6	6	A	175	178	Right-handed 310
Helix 7	7	A	186	188	Right-handed 310
Helix 8	8	A	189	200	Right-handed alpha
Helix 9	9	A	202	206	Right-handed 310
Helix 10	10	A	207	215	Right-handed alpha
Helix 11	11	A	226	233	Right-handed alpha
Helix 12	12	A	263	279	Right-handed alpha
Helix 13	13	A	297	312	Right-handed alpha
Helix 14	14	A	356	366	Right-handed alpha
Helix 15	15	A	372	386	Right-handed alpha
Helix 16	16	A	411	420	Right-handed alpha
Helix 17	17	A	423	427	Right-handed 310
Helix 18	18	A	429	442	Right-handed alpha
Helix 19	19	A	446	455	Right-handed alpha
Helix 20	20	A	457	470	Right-handed alpha
Helix 21	21	A	489	497	Right-handed alpha
Helix 22	22	B	10	25	Right-handed alpha
Helix 23	23	B	34	38	Right-handed 310
Helix 24	24	B	61	78	Right-handed alpha
Helix 25	25	B	101	112	Right-handed alpha
Helix 26	26	B	160	172	Right-handed alpha
Helix 27	27	B	175	179	Right-handed 310
Helix 28	28	B	184	188	Right-handed 310
Helix 29	29	B	189	200	Right-handed alpha
Helix 30	30	B	201	206	Right-handed 310
Helix 31	31	B	207	215	Right-handed alpha
Helix 32	32	B	225	233	Right-handed alpha
Helix 33	33	B	263	279	Right-handed alpha
Helix 34	34	B	297	312	Right-handed alpha
Helix 35	35	B	356	366	Right-handed alpha
Helix 36	36	B	372	386	Right-handed alpha
Helix 37	37	B	411	420	Right-handed alpha
Helix 38	38	B	423	427	Right-handed 310
Helix 39	39	B	429	442	Right-handed alpha
Helix 40	40	B	446	455	Right-handed alpha
Helix 41	41	B	457	471	Right-handed alpha
Helix 42	42	B	489	497	Right-handed alpha
Helix 43	43	B	513	528	Right-handed alpha
Helix 44	44	B	532	541	Right-handed alpha
Helix 45	45	B	543	557	Right-handed alpha
Helix 46	46	B	565	569	Right-handed 310
Helix 47	47	C	9	25	Right-handed alpha
Helix 48	48	C	61	78	Right-handed alpha
Helix 49	49	C	101	114	Right-handed alpha
Helix 50	50	C	160	172	Right-handed alpha
Helix 51	51	C	175	178	Right-handed 310
Helix 52	52	C	186	188	Right-handed 310
Helix 53	53	C	189	200	Right-handed alpha
Helix 54	54	C	201	206	Right-handed 310
Helix 55	55	C	207	215	Right-handed alpha
Helix 56	56	C	226	233	Right-handed alpha
Helix 57	57	C	263	279	Right-handed alpha
Helix 58	58	C	297	312	Right-handed alpha
Helix 59	59	C	356	366	Right-handed alpha
Helix 60	60	C	372	386	Right-handed alpha
Helix 61	61	C	411	420	Right-handed alpha
Helix 62	62	C	423	427	Right-handed 310
Helix 63	63	C	429	440	Right-handed alpha
Helix 64	64	C	446	455	Right-handed alpha
Helix 65	65	C	457	470	Right-handed alpha
Helix 66	66	C	489	496	Right-handed alpha
Helix 67	67	D	9	24	Right-handed alpha
Helix 68	68	D	61	78	Right-handed alpha
Helix 69	69	D	101	114	Right-handed alpha
Helix 70	70	D	160	172	Right-handed alpha
Helix 71	71	D	186	188	Right-handed 310
Helix 72	72	D	189	200	Right-handed alpha
Helix 73	73	D	201	206	Right-handed 310
Helix 74	74	D	207	215	Right-handed alpha
Helix 75	75	D	226	233	Right-handed alpha
Helix 76	76	D	263	279	Right-handed alpha
Helix 77	77	D	297	312	Right-handed alpha
Helix 78	78	D	356	366	Right-handed alpha
Helix 79	79	D	372	387	Right-handed alpha
Helix 80	80	D	411	420	Right-handed alpha
Helix 81	81	D	423	427	Right-handed 310
Helix 82	82	D	429	442	Right-handed alpha
Helix 83	83	D	446	455	Right-handed alpha
Helix 84	84	D	457	471	Right-handed alpha
Helix 85	85	D	489	496	Right-handed alpha
Helix 86	86	D	513	528	Right-handed alpha
Helix 87	87	D	533	540	Right-handed alpha
Helix 88	88	D	543	557	Right-handed alpha

There are 28 sheets in PDB entry 3LMM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	82	86	parallel
Strand 3	A	128	134	anti-parallel
Strand 4	A	118	123	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	151	first strand
Strand 2	A	156	158	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	184	first strand
Strand 2	A	223	225	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	256	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	320	325	parallel
Strand 4	A	330	336	anti-parallel
Strand 5	A	400	406	anti-parallel
Strand 6	A	392	396	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	286	first strand
Strand 2	A	289	293	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	422	first strand
Strand 2	A	472	473	anti-parallel
Strand 3	A	476	477	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	482	first strand
Strand 2	A	485	488	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	82	86	parallel
Strand 3	B	128	134	anti-parallel
Strand 4	B	118	123	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	53	54	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	156	158	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	256	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	320	325	parallel
Strand 4	B	330	336	anti-parallel
Strand 5	B	400	406	anti-parallel
Strand 6	B	392	396	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	473	first strand
Strand 2	B	476	477	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	482	first strand
Strand 2	B	485	488	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	563	first strand
Strand 2	B	570	573	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	82	86	parallel
Strand 3	C	128	134	anti-parallel
Strand 4	C	118	123	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	53	54	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	151	first strand
Strand 2	C	156	158	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	184	first strand
Strand 2	C	223	225	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	256	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	320	325	parallel
Strand 4	C	330	336	anti-parallel
Strand 5	C	400	406	anti-parallel
Strand 6	C	392	396	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	422	first strand
Strand 2	C	472	473	anti-parallel
Strand 3	C	476	477	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	445	first strand
Strand 2	C	485	488	anti-parallel
Strand 3	C	479	482	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	D	82	86	parallel
Strand 3	D	128	134	anti-parallel
Strand 4	D	118	123	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	53	54	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	184	first strand
Strand 2	D	223	225	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	256	first strand
Strand 2	D	240	247	anti-parallel
Strand 3	D	320	325	parallel
Strand 4	D	330	336	anti-parallel
Strand 5	D	400	406	anti-parallel
Strand 6	D	392	396	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	472	473	first strand
Strand 2	D	476	477	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	479	482	first strand
Strand 2	D	485	488	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	531	532	first strand
Strand 2	D	570	573	anti-parallel
Strand 3	D	560	563	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3LMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
3LMM