Analysis of interatomic Contacts of Structural Units in PDB entry:
3LMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LMW entry

There are 2 chains in PDB entry 3LMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 28HIS 499
B
 ALA 27HIS 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3LMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 38Right-handed 310
Helix 2
2
A
51 56Right-handed alpha
Helix 3
3
A
65 79Right-handed alpha
Helix 4
4
A
248 255Right-handed alpha
Helix 5
5
A
320 333Right-handed alpha
Helix 6
6
A
357 369Right-handed alpha
Helix 7
7
A
394 402Right-handed 310
Helix 8
8
A
485 491Right-handed alpha
Helix 9
9
B
34 38Right-handed 310
Helix 10
10
B
51 56Right-handed alpha
Helix 11
11
B
65 79Right-handed alpha
Helix 12
12
B
248 255Right-handed alpha
Helix 13
13
B
320 329Right-handed alpha
Helix 14
14
B
357 369Right-handed alpha
Helix 15
15
B
394 402Right-handed 310
Helix 16
16
B
485 490Right-handed alpha
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There are 12 sheets in PDB entry 3LMW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
83 87parallel
Strand 3
A
103 107parallel
Strand 4
A
138 142parallel
Strand 5
A
170 178parallel
Strand 6
A
147 150parallel
Strand 7
A
112 115parallel
Strand 8
A
91 94parallel
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There are 11 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
83 87parallel
Strand 3
A
103 107parallel
Strand 4
A
138 142parallel
Strand 5
A
170 178parallel
Strand 6
A
204 212parallel
Strand 7
A
225 237parallel
Strand 8
A
258 270parallel
Strand 9
A
288 296parallel
Strand 10
A
378 386parallel
Strand 11
A
448 456parallel
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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
124 128parallel
Strand 3
A
159 164parallel
Strand 4
A
187 189parallel
Strand 5
A
219 223parallel
Strand 6
A
240 245parallel
Strand 7
A
274 279parallel
Strand 8
A
302 304parallel
Strand 9
A
434 436parallel
Strand 10
A
465 467parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
197 199anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
350 353anti-parallel
Strand 3
A
341 342anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
426 428anti-parallel
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There are 11 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
83 87parallel
Strand 3
B
103 107parallel
Strand 4
B
135 142parallel
Strand 5
B
167 178parallel
Strand 6
B
201 212parallel
Strand 7
B
225 237parallel
Strand 8
B
258 270parallel
Strand 9
B
288 296parallel
Strand 10
B
378 386parallel
Strand 11
B
448 450parallel
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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 94first strand
Strand 2
B
111 115parallel
Strand 3
B
147 150parallel
Strand 4
B
167 178parallel
Strand 5
B
201 212parallel
Strand 6
B
225 237parallel
Strand 7
B
258 270parallel
Strand 8
B
288 296parallel
Strand 9
B
378 386parallel
Strand 10
B
453 456parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
124 129parallel
Strand 3
B
159 164parallel
Strand 4
B
187 189parallel
Strand 5
B
219 223parallel
Strand 6
B
240 245parallel
Strand 7
B
274 279parallel
Strand 8
B
302 305parallel
Strand 9
B
434 437parallel
Strand 10
B
465 467parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
197 199anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
352 353anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 393first strand
Strand 2
B
426 428anti-parallel
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