Analysis of interatomic Contacts of Structural Units in PDB entry:
3LMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LMY entry

There are 2 chains in PDB entry 3LMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 54ASN 552
B
 PRO 54ASN 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3LMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
73 77Right-handed 310
Helix 2
2
A
91 106Right-handed alpha
Helix 3
3
A
164 179Right-handed alpha
Helix 4
4
A
215 229Right-handed alpha
Helix 5
5
A
252 259Right-handed alpha
Helix 6
6
A
267 280Right-handed alpha
Helix 7
7
A
295 300Right-handed 310
Helix 8
8
A
326 344Right-handed alpha
Helix 9
9
A
357 364Right-handed alpha
Helix 10
10
A
364 374Right-handed alpha
Helix 11
11
A
380 398Right-handed alpha
Helix 12
12
A
406 411Right-handed alpha
Helix 13
13
A
428 439Right-handed alpha
Helix 14
14
A
447 450Right-handed 310
Helix 15
15
A
459 465Right-handed alpha
Helix 16
16
A
474 479Right-handed alpha
Helix 17
17
A
489 493Right-handed 310
Helix 18
18
A
497 503Right-handed alpha
Helix 19
19
A
504 515Right-handed alpha
Helix 20
20
A
521 539Right-handed alpha
Helix 21
21
B
73 77Right-handed 310
Helix 22
22
B
91 107Right-handed alpha
Helix 23
23
B
164 179Right-handed alpha
Helix 24
24
B
215 229Right-handed alpha
Helix 25
25
B
252 259Right-handed alpha
Helix 26
26
B
267 280Right-handed alpha
Helix 27
27
B
295 302Right-handed 310
Helix 28
28
B
326 344Right-handed alpha
Helix 29
29
B
358 364Right-handed alpha
Helix 30
30
B
364 374Right-handed alpha
Helix 31
31
B
379 398Right-handed alpha
Helix 32
32
B
406 411Right-handed alpha
Helix 33
33
B
428 439Right-handed alpha
Helix 34
34
B
459 466Right-handed alpha
Helix 35
35
B
474 479Right-handed alpha
Helix 36
36
B
497 503Right-handed alpha
Helix 37
37
B
504 515Right-handed alpha
Helix 38
38
B
521 539Right-handed alpha
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There are 8 sheets in PDB entry 3LMY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 71first strand
Strand 2
A
187 196anti-parallel
Strand 3
A
149 153anti-parallel
Strand 4
A
157 162anti-parallel
Strand 5
A
126 131parallel
Strand 6
A
78 81parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 71first strand
Strand 2
A
187 196anti-parallel
Strand 3
A
180 181anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 208first strand
Strand 2
A
233 237parallel
Strand 3
A
284 291parallel
Strand 4
A
348 352parallel
Strand 5
A
401 405parallel
Strand 6
A
420 423parallel
Strand 7
A
443 445parallel
Strand 8
A
481 488parallel
Strand 9
A
202 208parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
319 322anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 71first strand
Strand 2
B
187 196anti-parallel
Strand 3
B
149 153anti-parallel
Strand 4
B
157 162anti-parallel
Strand 5
B
126 131parallel
Strand 6
B
78 81parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 71first strand
Strand 2
B
187 196anti-parallel
Strand 3
B
180 181anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 208first strand
Strand 2
B
233 237parallel
Strand 3
B
284 291parallel
Strand 4
B
348 352parallel
Strand 5
B
401 405parallel
Strand 6
B
420 423parallel
Strand 7
B
443 445parallel
Strand 8
B
481 488parallel
Strand 9
B
202 208parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 308first strand
Strand 2
B
319 322anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il