Analysis of interatomic Contacts of Structural Units in PDB entry:
3LN1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LN1 entry

There are 4 chains in PDB entry 3LN1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 18GLN 569
B
 ALA 18GLN 569
C
 ALA 18GLN 569
D
 ALA 18GLN 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are126 helices in PDB entry 3LN1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 24Right-handed 310
Helix 2
2
A
58 67Right-handed alpha
Helix 3
3
A
70 79Right-handed alpha
Helix 4
4
A
81 89Right-handed alpha
Helix 5
5
A
91 108Right-handed alpha
Helix 6
6
A
124 130Right-handed alpha
Helix 7
7
A
159 168Right-handed alpha
Helix 8
8
A
181 193Right-handed alpha
Helix 9
9
A
216 221Right-handed alpha
Helix 10
10
A
223 231Right-handed alpha
Helix 11
11
A
251 256Right-handed alpha
Helix 12
12
A
277 280Right-handed 310
Helix 13
13
A
281 306Right-handed alpha
Helix 14
14
A
310 333Right-handed alpha
Helix 15
15
A
333 340Right-handed alpha
Helix 16
16
A
348 353Right-handed 310
Helix 17
17
A
364 371Right-handed alpha
Helix 18
18
A
372 377Right-handed 310
Helix 19
19
A
389 394Right-handed alpha
Helix 20
20
A
397 415Right-handed alpha
Helix 21
21
A
427 429Right-handed 310
Helix 22
22
A
430 444Right-handed alpha
Helix 23
23
A
448 456Right-handed alpha
Helix 24
24
A
463 469Right-handed alpha
Helix 25
25
A
471 482Right-handed alpha
Helix 26
26
A
483 487Right-handed 310
Helix 27
27
A
488 496Right-handed alpha
Helix 28
28
A
505 522Right-handed alpha
Helix 29
29
A
523 527Right-handed 310
Helix 30
30
A
532 537Right-handed 310
Helix 31
31
A
538 548Right-handed alpha
Helix 32
32
A
549 558Right-handed alpha
Helix 33
33
B
58 67Right-handed alpha
Helix 34
34
B
70 79Right-handed alpha
Helix 35
35
B
81 89Right-handed alpha
Helix 36
36
B
91 108Right-handed alpha
Helix 37
37
B
124 130Right-handed alpha
Helix 38
38
B
159 168Right-handed alpha
Helix 39
39
B
181 193Right-handed alpha
Helix 40
40
B
216 221Right-handed alpha
Helix 41
41
B
223 231Right-handed alpha
Helix 42
42
B
251 256Right-handed alpha
Helix 43
43
B
277 280Right-handed 310
Helix 44
44
B
281 306Right-handed alpha
Helix 45
45
B
310 333Right-handed alpha
Helix 46
46
B
333 340Right-handed alpha
Helix 47
47
B
348 353Right-handed 310
Helix 48
48
B
364 371Right-handed alpha
Helix 49
49
B
372 377Right-handed 310
Helix 50
50
B
389 394Right-handed alpha
Helix 51
51
B
397 415Right-handed alpha
Helix 52
52
B
427 429Right-handed 310
Helix 53
53
B
430 444Right-handed alpha
Helix 54
54
B
448 456Right-handed alpha
Helix 55
55
B
463 469Right-handed alpha
Helix 56
56
B
471 482Right-handed alpha
Helix 57
57
B
483 487Right-handed 310
Helix 58
58
B
488 496Right-handed alpha
Helix 59
59
B
505 522Right-handed alpha
Helix 60
60
B
523 527Right-handed 310
Helix 61
61
B
532 537Right-handed 310
Helix 62
62
B
538 548Right-handed alpha
Helix 63
63
B
549 558Right-handed alpha
Helix 64
64
C
19 24Right-handed 310
Helix 65
65
C
58 67Right-handed alpha
Helix 66
66
C
70 79Right-handed alpha
Helix 67
67
C
81 89Right-handed alpha
Helix 68
68
C
91 108Right-handed alpha
Helix 69
69
C
124 130Right-handed alpha
Helix 70
70
C
159 168Right-handed alpha
Helix 71
71
C
181 193Right-handed alpha
Helix 72
72
C
216 221Right-handed alpha
Helix 73
73
C
223 231Right-handed alpha
Helix 74
74
C
251 256Right-handed alpha
Helix 75
75
C
277 280Right-handed 310
Helix 76
76
C
281 306Right-handed alpha
Helix 77
77
C
310 333Right-handed alpha
Helix 78
78
C
333 340Right-handed alpha
Helix 79
79
C
348 353Right-handed 310
Helix 80
80
C
364 371Right-handed alpha
Helix 81
81
C
372 377Right-handed 310
Helix 82
82
C
389 394Right-handed alpha
Helix 83
83
C
397 415Right-handed alpha
Helix 84
84
C
427 429Right-handed 310
Helix 85
85
C
430 444Right-handed alpha
Helix 86
86
C
448 456Right-handed alpha
Helix 87
87
C
463 469Right-handed alpha
Helix 88
88
C
471 482Right-handed alpha
Helix 89
89
C
483 487Right-handed 310
Helix 90
90
C
488 496Right-handed alpha
Helix 91
91
C
505 522Right-handed alpha
Helix 92
92
C
523 527Right-handed 310
Helix 93
93
C
532 537Right-handed 310
Helix 94
94
C
538 548Right-handed alpha
Helix 95
95
C
549 558Right-handed alpha
Helix 96
96
D
58 67Right-handed alpha
Helix 97
97
D
70 79Right-handed alpha
Helix 98
98
D
81 89Right-handed alpha
Helix 99
99
D
91 108Right-handed alpha
Helix 100
100
D
124 130Right-handed alpha
Helix 101
101
D
159 168Right-handed alpha
Helix 102
102
D
181 193Right-handed alpha
Helix 103
103
D
216 221Right-handed alpha
Helix 104
104
D
223 231Right-handed alpha
Helix 105
105
D
251 256Right-handed alpha
Helix 106
106
D
277 280Right-handed 310
Helix 107
107
D
281 306Right-handed alpha
Helix 108
108
D
310 333Right-handed alpha
Helix 109
109
D
333 340Right-handed alpha
Helix 110
110
D
348 353Right-handed 310
Helix 111
111
D
364 371Right-handed alpha
Helix 112
112
D
372 377Right-handed 310
Helix 113
113
D
389 394Right-handed alpha
Helix 114
114
D
397 415Right-handed alpha
Helix 115
115
D
427 429Right-handed 310
Helix 116
116
D
430 444Right-handed alpha
Helix 117
117
D
448 456Right-handed alpha
Helix 118
118
D
463 469Right-handed alpha
Helix 119
119
D
471 482Right-handed alpha
Helix 120
120
D
483 487Right-handed 310
Helix 121
121
D
488 496Right-handed alpha
Helix 122
122
D
505 522Right-handed alpha
Helix 123
123
D
523 527Right-handed 310
Helix 124
124
D
532 537Right-handed 310
Helix 125
125
D
538 548Right-handed alpha
Helix 126
126
D
549 556Right-handed alpha
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There are 20 sheets in PDB entry 3LN1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
40 43anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
56 57anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
135 136anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 243first strand
Strand 2
A
246 248anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
386 388anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
40 43anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
56 57anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
135 136anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
246 248anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 383first strand
Strand 2
B
386 388anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 34first strand
Strand 2
C
40 43anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 50first strand
Strand 2
C
56 57anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 117first strand
Strand 2
C
135 136anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
241 243first strand
Strand 2
C
246 248anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
381 383first strand
Strand 2
C
386 388anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 34first strand
Strand 2
D
40 43anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
49 50first strand
Strand 2
D
56 57anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 117first strand
Strand 2
D
135 136anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
241 243first strand
Strand 2
D
246 248anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
381 383first strand
Strand 2
D
386 388anti-parallel
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