Analysis of interatomic Contacts of Structural Units in PDB entry:
3LNB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LNB entry

There is 1 chain in PDB entry 3LNB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3LNB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 13Right-handed alpha
Helix 2
2
A
21 23Right-handed 310
Helix 3
3
A
24 36Right-handed alpha
Helix 4
4
A
40 46Right-handed alpha
Helix 5
5
A
52 61Right-handed alpha
Helix 6
6
A
68 83Right-handed alpha
Helix 7
7
A
197 211Right-handed alpha
Helix 8
8
A
214 218Right-handed 310
Helix 9
9
A
252 265Right-handed alpha
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There are 3 sheets in PDB entry 3LNB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
222 226anti-parallel
Strand 3
A
229 233anti-parallel
Strand 4
A
237 242anti-parallel
Strand 5
A
245 250anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
86 96anti-parallel
Strand 3
A
108 115anti-parallel
Strand 4
A
118 122anti-parallel
Strand 5
A
135 136anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
86 96anti-parallel
Strand 3
A
186 195anti-parallel
Strand 4
A
161 166anti-parallel
Strand 5
A
147 152anti-parallel
Strand 6
A
142 144anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il