Analysis of interatomic Contacts of Structural Units in PDB entry:
3LNC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LNC entry

There are 2 chains in PDB entry 3LNC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 210
B
 SER 0GLU 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3LNC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 28Right-handed alpha
Helix 2
2
A
59 69Right-handed alpha
Helix 3
3
A
89 97Right-handed alpha
Helix 4
4
A
105 116Right-handed alpha
Helix 5
5
A
129 136Right-handed alpha
Helix 6
6
A
151 160Right-handed alpha
Helix 7
7
A
161 165Right-handed 310
Helix 8
8
A
173 190Right-handed alpha
Helix 9
9
A
191 193Right-handed 310
Helix 10
10
A
197 206Right-handed alpha
Helix 11
11
B
21 28Right-handed alpha
Helix 12
12
B
59 69Right-handed alpha
Helix 13
13
B
89 97Right-handed alpha
Helix 14
14
B
105 116Right-handed alpha
Helix 15
15
B
129 135Right-handed alpha
Helix 16
16
B
150 161Right-handed alpha
Helix 17
17
B
162 165Right-handed 310
Helix 18
18
B
173 189Right-handed alpha
Helix 19
19
B
190 195Right-handed 310
Helix 20
20
B
197 206Right-handed alpha
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There are 5 sheets in PDB entry 3LNC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
195 196anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
99 103parallel
Strand 3
A
8 12parallel
Strand 4
A
120 126parallel
Strand 5
A
167 170parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
40 41parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
72 78anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
99 103parallel
Strand 3
B
8 12parallel
Strand 4
B
120 126parallel
Strand 5
B
167 170parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
40 41parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
72 78anti-parallel
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