Analysis of interatomic Contacts of Structural Units in PDB entry:
3LNL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LNL entry

There are 2 chains in PDB entry 3LNL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3ILE 370
B
 ALA 1ILE 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3LNL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 18Right-handed alpha
Helix 2
2
A
19 23Right-handed 310
Helix 3
3
A
50 61Right-handed alpha
Helix 4
4
A
83 94Right-handed alpha
Helix 5
5
A
102 107Right-handed alpha
Helix 6
6
A
111 120Right-handed alpha
Helix 7
7
A
210 219Right-handed alpha
Helix 8
8
A
254 265Right-handed alpha
Helix 9
9
A
293 300Right-handed alpha
Helix 10
10
A
311 322Right-handed alpha
Helix 11
11
A
329 334Right-handed 310
Helix 12
12
A
335 351Right-handed alpha
Helix 13
13
B
6 18Right-handed alpha
Helix 14
14
B
19 23Right-handed 310
Helix 15
15
B
50 61Right-handed alpha
Helix 16
16
B
82 94Right-handed alpha
Helix 17
17
B
102 107Right-handed alpha
Helix 18
18
B
111 120Right-handed alpha
Helix 19
19
B
143 145Right-handed 310
Helix 20
20
B
146 157Right-handed alpha
Helix 21
21
B
210 222Right-handed alpha
Helix 22
22
B
254 265Right-handed alpha
Helix 23
23
B
293 300Right-handed alpha
Helix 24
24
B
311 322Right-handed alpha
Helix 25
25
B
329 334Right-handed 310
Helix 26
26
B
335 351Right-handed alpha
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There are 6 sheets in PDB entry 3LNL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
97 100anti-parallel
Strand 3
A
64 67parallel
Strand 4
A
43 46parallel
Strand 5
A
357 359parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
244 253anti-parallel
Strand 3
A
279 285anti-parallel
Strand 4
A
304 307parallel
Strand 5
A
325 327parallel
Strand 6
A
271 273anti-parallel
Strand 7
B
368 369anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
130 139anti-parallel
Strand 3
A
230 241anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
B
270 273anti-parallel
Strand 3
B
325 327anti-parallel
Strand 4
B
304 307parallel
Strand 5
B
279 285parallel
Strand 6
B
244 253anti-parallel
Strand 7
B
123 127anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
97 100anti-parallel
Strand 3
B
64 67parallel
Strand 4
B
43 46parallel
Strand 5
B
357 359parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 176first strand
Strand 2
B
197 207anti-parallel
Strand 3
B
130 142anti-parallel
Strand 4
B
229 241anti-parallel
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