Analysis of interatomic Contacts of Structural Units in PDB entry:
3LNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LNP entry

There is 1 chain in PDB entry 3LNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 17PRO 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3LNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
90 97Right-handed 310
Helix 2
2
A
105 113Right-handed alpha
Helix 3
3
A
113 122Right-handed alpha
Helix 4
4
A
123 141Right-handed alpha
Helix 5
5
A
152 164Right-handed alpha
Helix 6
6
A
183 200Right-handed alpha
Helix 7
7
A
201 205Right-handed 310
Helix 8
8
A
222 237Right-handed alpha
Helix 9
9
A
247 259Right-handed alpha
Helix 10
10
A
261 269Right-handed alpha
Helix 11
11
A
285 296Right-handed alpha
Helix 12
12
A
302 309Right-handed alpha
Helix 13
13
A
315 322Right-handed alpha
Helix 14
14
A
340 357Right-handed alpha
Helix 15
15
A
363 372Right-handed alpha
Helix 16
16
A
372 379Right-handed alpha
Helix 17
17
A
403 407Right-handed 310
Helix 18
18
A
411 419Right-handed alpha
Helix 19
19
A
421 423Right-handed 310
Helix 20
20
A
445 462Right-handed alpha
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There are 4 sheets in PDB entry 3LNP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 61first strand
Strand 2
A
44 52anti-parallel
Strand 3
A
19 28anti-parallel
Strand 4
A
69 74parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 61first strand
Strand 2
A
44 52anti-parallel
Strand 3
A
19 28anti-parallel
Strand 4
A
78 82parallel
Strand 5
A
396 400anti-parallel
Strand 6
A
425 430anti-parallel
Strand 7
A
433 437anti-parallel
Strand 8
A
440 441anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
143 148parallel
Strand 3
A
166 173parallel
Strand 4
A
209 215parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 244first strand
Strand 2
A
276 280parallel
Strand 3
A
298 301parallel
Strand 4
A
326 328parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il