Analysis of interatomic Contacts of Structural Units in PDB entry:
3LNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LNV entry

There is 1 chain in PDB entry 3LNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ILE 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 3LNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 7Right-handed alpha
Helix 2
2
A
10 22Right-handed alpha
Helix 3
3
A
41 58Right-handed alpha
Helix 4
4
A
73 86Right-handed alpha
Helix 5
5
A
102 113Right-handed alpha
Helix 6
6
A
120 128Right-handed alpha
Helix 7
7
A
147 149Right-handed 310
Helix 8
8
A
150 157Right-handed 310
Helix 9
9
A
187 201Right-handed alpha
Helix 10
10
A
217 223Right-handed alpha
Helix 11
11
A
225 232Right-handed alpha
Helix 12
12
A
239 246Right-handed alpha
Helix 13
13
A
247 258Right-handed alpha
Helix 14
14
A
265 276Right-handed alpha
Helix 15
15
A
277 282Right-handed 310
Helix 16
16
A
300 312Right-handed alpha
Helix 17
17
A
313 315Right-handed 310
Helix 18
18
A
317 319Right-handed 310
Helix 19
19
A
328 331Right-handed 310
Helix 20
20
A
414 423Right-handed alpha
Helix 21
21
A
457 465Right-handed alpha
Helix 22
22
A
466 477Right-handed alpha
Helix 23
23
A
478 482Right-handed 310
Helix 24
24
A
512 532Right-handed alpha
Helix 25
25
A
551 565Right-handed alpha
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There are 7 sheets in PDB entry 3LNV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
26 32anti-parallel
Strand 3
A
234 237parallel
Strand 4
A
208 211parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 93first strand
Strand 2
A
65 69parallel
Strand 3
A
116 119parallel
Strand 4
A
141 145parallel
Strand 5
A
137 138anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 172first strand
Strand 2
A
182 186anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 264first strand
Strand 2
A
291 294parallel
Strand 3
A
321 326parallel
Strand 4
A
333 336anti-parallel
Strand 5
A
376 377anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 348first strand
Strand 2
A
369 372anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 384first strand
Strand 2
A
398 403anti-parallel
Strand 3
A
436 445anti-parallel
Strand 4
A
448 454anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 494first strand
Strand 2
A
497 506anti-parallel
Strand 3
A
537 542parallel
Strand 4
A
572 575anti-parallel
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