Analysis of interatomic Contacts of Structural Units in PDB entry:
3LO3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3LO3 entry

There are 14 chains in PDB entry 3LO3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -1	GLY 92
B	SER -1	GLY 92
C	SER -1	GLY 92
D	SER -1	GLY 92
E	SER -1	GLY 92
F	SER -1	GLY 92
G	SER -1	GLY 92
H	SER -1	GLY 92
I	SER -1	GLY 92
J	SER -1	GLY 92
K	SER -1	GLY 92
L	SER -1	GLY 92
M	SER -1	GLY 92
N	SER -1	LYS 38

There are123 helices in PDB entry 3LO3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	13	30	Right-handed alpha
Helix 2	2	A	60	70	Right-handed alpha
Helix 3	3	A	70	75	Right-handed alpha
Helix 4	4	A	76	83	Right-handed alpha
Helix 5	5	B	13	30	Right-handed alpha
Helix 6	6	B	60	70	Right-handed alpha
Helix 7	7	B	70	75	Right-handed alpha
Helix 8	8	B	76	83	Right-handed alpha
Helix 9	9	C	13	30	Right-handed alpha
Helix 10	10	C	60	70	Right-handed alpha
Helix 11	11	C	70	75	Right-handed alpha
Helix 12	12	C	76	83	Right-handed alpha
Helix 13	13	D	13	25	Right-handed alpha
Helix 14	14	D	26	29	Right-handed 310
Helix 15	15	D	60	70	Right-handed alpha
Helix 16	16	D	70	75	Right-handed alpha
Helix 17	17	D	76	83	Right-handed alpha
Helix 18	18	E	13	29	Right-handed alpha
Helix 19	19	E	30	32	Right-handed 310
Helix 20	20	E	60	69	Right-handed alpha
Helix 21	21	E	70	75	Right-handed alpha
Helix 22	22	E	76	83	Right-handed alpha
Helix 23	23	F	13	29	Right-handed alpha
Helix 24	24	F	30	32	Right-handed 310
Helix 25	25	F	60	70	Right-handed alpha
Helix 26	26	F	70	75	Right-handed alpha
Helix 27	27	F	76	83	Right-handed alpha
Helix 28	28	G	13	29	Right-handed alpha
Helix 29	29	G	30	32	Right-handed 310
Helix 30	30	G	60	70	Right-handed alpha
Helix 31	31	G	70	75	Right-handed alpha
Helix 32	32	G	76	83	Right-handed alpha
Helix 33	33	H	13	23	Right-handed alpha
Helix 34	34	H	24	29	Right-handed 310
Helix 35	35	H	60	69	Right-handed alpha
Helix 36	36	H	70	75	Right-handed alpha
Helix 37	37	H	76	83	Right-handed alpha
Helix 38	38	I	13	29	Right-handed alpha
Helix 39	39	I	30	32	Right-handed 310
Helix 40	40	I	60	69	Right-handed alpha
Helix 41	41	I	70	75	Right-handed alpha
Helix 42	42	I	76	83	Right-handed alpha
Helix 43	43	J	13	30	Right-handed alpha
Helix 44	44	J	60	69	Right-handed alpha
Helix 45	45	J	70	83	Right-handed alpha
Helix 46	46	K	13	31	Right-handed alpha
Helix 47	47	K	60	70	Right-handed alpha
Helix 48	48	K	70	75	Right-handed alpha
Helix 49	49	K	76	83	Right-handed alpha
Helix 50	50	L	13	29	Right-handed alpha
Helix 51	51	L	30	32	Right-handed 310
Helix 52	52	L	60	69	Right-handed alpha
Helix 53	53	L	70	76	Right-handed alpha
Helix 54	54	L	76	83	Right-handed alpha
Helix 55	55	M	13	30	Right-handed alpha
Helix 56	56	M	60	70	Right-handed alpha
Helix 57	57	M	70	83	Right-handed alpha
Helix 58	58	N	13	25	Right-handed alpha
Helix 59	59	N	26	32	Right-handed 310
Helix 60	60	N	60	69	Right-handed alpha
Helix 61	61	N	70	75	Right-handed alpha
Helix 62	62	N	76	83	Right-handed alpha
Helix 63	63	O	13	31	Right-handed alpha
Helix 64	64	O	60	70	Right-handed alpha
Helix 65	65	O	72	75	Right-handed 310
Helix 66	66	O	76	83	Right-handed alpha
Helix 67	67	P	13	30	Right-handed alpha
Helix 68	68	P	60	69	Right-handed alpha
Helix 69	69	P	70	75	Right-handed alpha
Helix 70	70	P	76	83	Right-handed alpha
Helix 71	71	Q	13	25	Right-handed alpha
Helix 72	72	Q	26	32	Right-handed 310
Helix 73	73	Q	60	70	Right-handed alpha
Helix 74	74	Q	70	75	Right-handed alpha
Helix 75	75	Q	76	83	Right-handed alpha
Helix 76	76	R	13	31	Right-handed alpha
Helix 77	77	R	60	69	Right-handed alpha
Helix 78	78	R	70	75	Right-handed alpha
Helix 79	79	R	76	83	Right-handed alpha
Helix 80	80	S	13	30	Right-handed alpha
Helix 81	81	S	60	69	Right-handed alpha
Helix 82	82	S	70	75	Right-handed alpha
Helix 83	83	S	76	83	Right-handed alpha
Helix 84	84	T	13	30	Right-handed alpha
Helix 85	85	T	60	69	Right-handed alpha
Helix 86	86	T	70	83	Right-handed alpha
Helix 87	87	U	13	29	Right-handed alpha
Helix 88	88	U	30	32	Right-handed 310
Helix 89	89	U	60	70	Right-handed alpha
Helix 90	90	U	70	75	Right-handed alpha
Helix 91	91	U	76	83	Right-handed alpha
Helix 92	92	V	13	29	Right-handed alpha
Helix 93	93	V	30	32	Right-handed 310
Helix 94	94	V	60	69	Right-handed alpha
Helix 95	95	V	70	75	Right-handed alpha
Helix 96	96	V	76	83	Right-handed alpha
Helix 97	97	W	13	29	Right-handed alpha
Helix 98	98	W	30	32	Right-handed 310
Helix 99	99	W	60	69	Right-handed alpha
Helix 100	100	W	70	83	Right-handed alpha
Helix 101	101	X	13	31	Right-handed alpha
Helix 102	102	X	60	69	Right-handed alpha
Helix 103	103	X	70	75	Right-handed alpha
Helix 104	104	X	76	83	Right-handed alpha
Helix 105	105	Y	13	30	Right-handed alpha
Helix 106	106	Y	60	69	Right-handed alpha
Helix 107	107	Y	70	76	Right-handed alpha
Helix 108	108	Y	76	83	Right-handed alpha
Helix 109	109	Z	13	29	Right-handed alpha
Helix 110	110	Z	60	69	Right-handed alpha
Helix 111	111	Z	70	75	Right-handed alpha
Helix 112	112	Z	76	83	Right-handed alpha
Helix 113	113	a	13	22	Right-handed alpha
Helix 114	114	a	23	29	Right-handed alpha
Helix 115	115	a	30	32	Right-handed 310
Helix 116	116	a	60	69	Right-handed alpha
Helix 117	117	a	70	75	Right-handed alpha
Helix 118	118	a	76	83	Right-handed alpha
Helix 119	119	b	13	29	Right-handed alpha
Helix 120	120	b	30	32	Right-handed 310
Helix 121	121	b	60	69	Right-handed alpha
Helix 122	122	b	70	75	Right-handed alpha
Helix 123	123	b	76	83	Right-handed alpha

There are 21 sheets in PDB entry 3LO3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	40	first strand
Strand 2	A	52	58	anti-parallel
Strand 3	A	3	11	anti-parallel
Strand 4	A	84	91	anti-parallel
Strand 5	B	42	45	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	B	84	91	anti-parallel
Strand 3	B	3	11	anti-parallel
Strand 4	B	52	58	anti-parallel
Strand 5	B	34	40	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	40	first strand
Strand 2	C	52	58	anti-parallel
Strand 3	C	3	11	anti-parallel
Strand 4	C	84	91	anti-parallel
Strand 5	D	42	45	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	D	84	91	anti-parallel
Strand 3	D	3	11	anti-parallel
Strand 4	D	52	58	anti-parallel
Strand 5	D	34	40	anti-parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	40	first strand
Strand 2	F	52	58	anti-parallel
Strand 3	F	3	11	anti-parallel
Strand 4	F	84	91	anti-parallel
Strand 5	E	34	45	anti-parallel
Strand 6	E	52	58	anti-parallel
Strand 7	E	3	11	anti-parallel
Strand 8	E	84	91	anti-parallel
Strand 9	F	42	45	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	34	40	first strand
Strand 2	G	52	58	anti-parallel
Strand 3	G	3	11	anti-parallel
Strand 4	G	84	91	anti-parallel
Strand 5	H	42	45	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	45	first strand
Strand 2	H	84	91	anti-parallel
Strand 3	H	3	11	anti-parallel
Strand 4	H	52	58	anti-parallel
Strand 5	H	34	40	anti-parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	40	first strand
Strand 2	J	52	58	anti-parallel
Strand 3	J	3	11	anti-parallel
Strand 4	J	84	91	anti-parallel
Strand 5	I	34	45	anti-parallel
Strand 6	I	52	58	anti-parallel
Strand 7	I	3	11	anti-parallel
Strand 8	I	84	91	anti-parallel
Strand 9	J	42	45	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	34	40	first strand
Strand 2	K	52	58	anti-parallel
Strand 3	K	3	11	anti-parallel
Strand 4	K	84	91	anti-parallel
Strand 5	L	42	45	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	42	45	first strand
Strand 2	L	84	91	anti-parallel
Strand 3	L	3	11	anti-parallel
Strand 4	L	52	58	anti-parallel
Strand 5	L	34	40	anti-parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	34	40	first strand
Strand 2	M	52	58	anti-parallel
Strand 3	M	3	11	anti-parallel
Strand 4	M	84	91	anti-parallel
Strand 5	N	34	45	anti-parallel
Strand 6	N	52	58	anti-parallel
Strand 7	N	3	11	anti-parallel
Strand 8	N	84	91	anti-parallel
Strand 9	M	42	45	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	34	40	first strand
Strand 2	O	52	58	anti-parallel
Strand 3	O	3	11	anti-parallel
Strand 4	O	84	91	anti-parallel
Strand 5	P	42	45	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	42	45	first strand
Strand 2	P	84	91	anti-parallel
Strand 3	P	3	11	anti-parallel
Strand 4	P	52	58	anti-parallel
Strand 5	P	34	40	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	34	40	first strand
Strand 2	Q	52	58	anti-parallel
Strand 3	Q	3	11	anti-parallel
Strand 4	Q	84	91	anti-parallel
Strand 5	R	42	45	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	42	45	first strand
Strand 2	R	84	90	anti-parallel
Strand 3	R	3	11	anti-parallel
Strand 4	R	52	58	anti-parallel
Strand 5	R	35	40	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	34	40	first strand
Strand 2	S	52	58	anti-parallel
Strand 3	S	3	11	anti-parallel
Strand 4	S	84	91	anti-parallel
Strand 5	T	42	45	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	42	45	first strand
Strand 2	T	84	91	anti-parallel
Strand 3	T	3	11	anti-parallel
Strand 4	T	52	58	anti-parallel
Strand 5	T	34	40	anti-parallel

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There are 9 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	35	40	first strand
Strand 2	V	52	58	anti-parallel
Strand 3	V	3	11	anti-parallel
Strand 4	V	84	91	anti-parallel
Strand 5	U	35	45	anti-parallel
Strand 6	U	52	58	anti-parallel
Strand 7	U	3	11	anti-parallel
Strand 8	U	84	91	anti-parallel
Strand 9	V	42	45	anti-parallel

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There are 9 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	34	40	first strand
Strand 2	W	52	58	anti-parallel
Strand 3	W	3	11	anti-parallel
Strand 4	W	84	91	anti-parallel
Strand 5	X	34	45	anti-parallel
Strand 6	X	52	58	anti-parallel
Strand 7	X	3	11	anti-parallel
Strand 8	X	84	91	anti-parallel
Strand 9	W	42	45	anti-parallel

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There are 9 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	35	40	first strand
Strand 2	Z	52	58	anti-parallel
Strand 3	Z	3	11	anti-parallel
Strand 4	Z	84	91	anti-parallel
Strand 5	Y	34	45	anti-parallel
Strand 6	Y	52	58	anti-parallel
Strand 7	Y	3	11	anti-parallel
Strand 8	Y	84	91	anti-parallel
Strand 9	Z	42	45	anti-parallel

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There are 9 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	3	11	first strand
Strand 2	a	52	58	anti-parallel
Strand 3	a	34	45	anti-parallel
Strand 4	b	84	91	anti-parallel
Strand 5	b	3	11	anti-parallel
Strand 6	b	52	58	anti-parallel
Strand 7	b	34	45	anti-parallel
Strand 8	a	84	91	anti-parallel
Strand 9	a	3	11	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3LO3

Analysis of interatomic Contacts of Structural Units in PDB entry:
3LO3