Analysis of interatomic Contacts of Structural Units in PDB entry:
3LOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LOO entry

There are 3 chains in PDB entry 3LOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4PHE 344
B
 LEU 4PHE 344
C
 LEU 4GLN 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 3LOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 31Right-handed alpha
Helix 2
2
A
42 46Right-handed 310
Helix 3
3
A
47 57Right-handed alpha
Helix 4
4
A
64 78Right-handed alpha
Helix 5
5
A
92 106Right-handed alpha
Helix 6
6
A
137 143Right-handed 310
Helix 7
7
A
144 149Right-handed 310
Helix 8
8
A
150 160Right-handed alpha
Helix 9
9
A
169 187Right-handed alpha
Helix 10
10
A
198 204Right-handed alpha
Helix 11
11
A
204 212Right-handed alpha
Helix 12
12
A
213 215Right-handed 310
Helix 13
13
A
222 232Right-handed alpha
Helix 14
14
A
238 248Right-handed alpha
Helix 15
15
A
297 312Right-handed alpha
Helix 16
16
A
315 334Right-handed alpha
Helix 17
17
A
335 340Right-handed 310
Helix 18
18
B
24 31Right-handed alpha
Helix 19
19
B
42 46Right-handed 310
Helix 20
20
B
47 55Right-handed alpha
Helix 21
21
B
64 78Right-handed alpha
Helix 22
22
B
92 106Right-handed alpha
Helix 23
23
B
137 143Right-handed 310
Helix 24
24
B
144 149Right-handed 310
Helix 25
25
B
150 160Right-handed alpha
Helix 26
26
B
169 187Right-handed alpha
Helix 27
27
B
198 212Right-handed alpha
Helix 28
28
B
213 215Right-handed 310
Helix 29
29
B
222 232Right-handed alpha
Helix 30
30
B
238 248Right-handed alpha
Helix 31
31
B
288 292Right-handed 310
Helix 32
32
B
297 311Right-handed alpha
Helix 33
33
B
315 334Right-handed alpha
Helix 34
34
B
335 340Right-handed 310
Helix 35
35
C
24 31Right-handed alpha
Helix 36
36
C
42 44Right-handed 310
Helix 37
37
C
45 55Right-handed alpha
Helix 38
38
C
64 78Right-handed alpha
Helix 39
39
C
92 105Right-handed alpha
Helix 40
40
C
137 143Right-handed 310
Helix 41
41
C
144 149Right-handed 310
Helix 42
42
C
150 159Right-handed alpha
Helix 43
43
C
169 187Right-handed alpha
Helix 44
44
C
198 204Right-handed alpha
Helix 45
45
C
204 212Right-handed alpha
Helix 46
46
C
213 215Right-handed 310
Helix 47
47
C
222 233Right-handed alpha
Helix 48
48
C
238 248Right-handed alpha
Helix 49
49
C
297 311Right-handed alpha
Helix 50
50
C
315 332Right-handed alpha
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There are 6 sheets in PDB entry 3LOO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 114first strand
Strand 2
A
83 90parallel
Strand 3
A
9 12parallel
Strand 4
A
162 166parallel
Strand 5
A
190 194parallel
Strand 6
A
217 221parallel
Strand 7
A
259 264parallel
Strand 8
A
267 273anti-parallel
Strand 9
A
280 282anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 40first strand
Strand 2
A
130 136parallel
Strand 3
A
120 127anti-parallel
Strand 4
A
16 22parallel
Strand 5
A
59 63anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 114first strand
Strand 2
B
83 90parallel
Strand 3
B
9 12parallel
Strand 4
B
162 166parallel
Strand 5
B
190 194parallel
Strand 6
B
217 221parallel
Strand 7
B
259 264parallel
Strand 8
B
267 273anti-parallel
Strand 9
B
280 282anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
B
130 136parallel
Strand 3
B
121 127anti-parallel
Strand 4
B
16 22parallel
Strand 5
B
59 63anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 114first strand
Strand 2
C
83 90parallel
Strand 3
C
9 12parallel
Strand 4
C
162 166parallel
Strand 5
C
190 194parallel
Strand 6
C
217 221parallel
Strand 7
C
259 264parallel
Strand 8
C
267 273anti-parallel
Strand 9
C
280 282anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 40first strand
Strand 2
C
130 136parallel
Strand 3
C
121 127anti-parallel
Strand 4
C
16 22parallel
Strand 5
C
59 63anti-parallel
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