Analysis of interatomic Contacts of Structural Units in PDB entry:
3LOP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LOP entry

There is 1 chain in PDB entry 3LOP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 35GLU 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3LOP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 69Right-handed alpha
Helix 2
2
A
87 102Right-handed alpha
Helix 3
3
A
112 122Right-handed alpha
Helix 4
4
A
123 129Right-handed alpha
Helix 5
5
A
139 144Right-handed 310
Helix 6
6
A
154 169Right-handed alpha
Helix 7
7
A
181 197Right-handed alpha
Helix 8
8
A
215 225Right-handed alpha
Helix 9
9
A
235 249Right-handed alpha
Helix 10
10
A
262 271Right-handed alpha
Helix 11
11
A
271 276Right-handed alpha
Helix 12
12
A
292 306Right-handed alpha
Helix 13
13
A
313 334Right-handed alpha
Helix 14
14
A
338 348Right-handed alpha
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There are 4 sheets in PDB entry 3LOP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 83first strand
Strand 2
A
36 42parallel
Strand 3
A
104 108parallel
Strand 4
A
132 133parallel
Strand 5
A
148 149parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 208first strand
Strand 2
A
174 179parallel
Strand 3
A
229 233parallel
Strand 4
A
254 257parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
374 378anti-parallel
Strand 3
A
384 386anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
359 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il