Analysis of interatomic Contacts of Structural Units in PDB entry:
3LP3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LP3 entry

There are 2 chains in PDB entry 3LP3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 426ILE 556
B
 SER 426ILE 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3LP3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
473 488Right-handed alpha
Helix 2
2
A
499 508Right-handed alpha
Helix 3
3
A
515 527Right-handed alpha
Helix 4
4
A
542 554Right-handed alpha
Helix 5
5
B
473 488Right-handed alpha
Helix 6
6
B
499 509Right-handed alpha
Helix 7
7
B
515 528Right-handed alpha
Helix 8
8
B
542 553Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3LP3.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 535first strand
Strand 2
A
492 497parallel
Strand 3
A
438 446parallel
Strand 4
A
453 459anti-parallel
Strand 5
A
464 469anti-parallel
Strand 6
B
464 469anti-parallel
Strand 7
B
453 459anti-parallel
Strand 8
B
438 446anti-parallel
Strand 9
B
492 497parallel
Strand 10
B
530 535parallel
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