Analysis of interatomic Contacts of Structural Units in PDB entry:
3LPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LPC entry

There is 1 chain in PDB entry 3LPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3LPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 10Right-handed 310
Helix 2
2
A
11 16Right-handed alpha
Helix 3
3
A
21 28Right-handed alpha
Helix 4
4
A
50 54Right-handed 310
Helix 5
5
A
63 68Right-handed alpha
Helix 6
6
A
94 98Right-handed 310
Helix 7
7
A
104 115Right-handed alpha
Helix 8
8
A
144 157Right-handed alpha
Helix 9
9
A
184 198Right-handed alpha
Helix 10
10
A
211 213Right-handed 310
Helix 11
11
A
275 297Right-handed alpha
Helix 12
12
A
302 313Right-handed alpha
Helix 13
13
A
331 341Right-handed alpha
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There are 3 sheets in PDB entry 3LPC. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
131 136parallel
Strand 3
A
36 41parallel
Strand 4
A
172 175parallel
Strand 5
A
200 204parallel
Strand 6
A
224 229parallel
Strand 7
A
247 250parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
215 216anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 259first strand
Strand 2
A
268 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il