Analysis of interatomic Contacts of Structural Units in PDB entry:
3LPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LPF entry

There are 2 chains in PDB entry 3LPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1GLY 601
B
 SER -1GLY 601
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3LPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 37Right-handed 310
Helix 2
2
A
57 62Right-handed alpha
Helix 3
3
A
119 122Right-handed 310
Helix 4
4
A
307 322Right-handed alpha
Helix 5
5
A
334 345Right-handed alpha
Helix 6
6
A
381 400Right-handed alpha
Helix 7
7
A
420 436Right-handed alpha
Helix 8
8
A
456 460Right-handed 310
Helix 9
9
A
477 497Right-handed alpha
Helix 10
10
A
522 538Right-handed alpha
Helix 11
11
A
579 591Right-handed alpha
Helix 12
12
B
33 37Right-handed 310
Helix 13
13
B
57 62Right-handed alpha
Helix 14
14
B
76 80Right-handed 310
Helix 15
15
B
119 122Right-handed 310
Helix 16
16
B
307 322Right-handed alpha
Helix 17
17
B
335 345Right-handed alpha
Helix 18
18
B
381 400Right-handed alpha
Helix 19
19
B
420 436Right-handed alpha
Helix 20
20
B
456 460Right-handed 310
Helix 21
21
B
477 497Right-handed alpha
Helix 22
22
B
522 538Right-handed alpha
Helix 23
23
B
580 591Right-handed alpha
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There are 15 sheets in PDB entry 3LPF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
174 179anti-parallel
Strand 3
A
83 88anti-parallel
Strand 4
A
114 117anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
18 24anti-parallel
Strand 3
A
66 74anti-parallel
Strand 4
A
127 135anti-parallel
Strand 5
A
94 99anti-parallel
Strand 6
A
103 107anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
156 160anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 191first strand
Strand 2
A
201 208anti-parallel
Strand 3
A
233 235anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 228first strand
Strand 2
A
211 217anti-parallel
Strand 3
A
250 257anti-parallel
Strand 4
A
262 269anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
280 283anti-parallel
Strand 3
A
286 287anti-parallel
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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 571first strand
Strand 2
A
543 552parallel
Strand 3
A
500 504parallel
Strand 4
A
463 466parallel
Strand 5
A
441 446parallel
Strand 6
A
405 412parallel
Strand 7
A
347 351parallel
Strand 8
A
325 328parallel
Strand 9
A
290 295parallel
Strand 10
A
543 552parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
174 179anti-parallel
Strand 3
B
83 88anti-parallel
Strand 4
B
114 117anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
19 23anti-parallel
Strand 3
B
66 74anti-parallel
Strand 4
B
127 135anti-parallel
Strand 5
B
94 99anti-parallel
Strand 6
B
102 108anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 150first strand
Strand 2
B
156 160anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 191first strand
Strand 2
B
199 204anti-parallel
Strand 3
B
232 237anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 228first strand
Strand 2
B
211 217anti-parallel
Strand 3
B
250 257anti-parallel
Strand 4
B
262 269anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Strand 2
B
280 283anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 294first strand
Strand 2
B
325 327parallel
Strand 3
B
347 351parallel
Strand 4
B
405 412parallel
Strand 5
B
441 444parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
463 466first strand
Strand 2
B
500 505parallel
Strand 3
B
543 548parallel
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