Analysis of interatomic Contacts of Structural Units in PDB entry:
3LPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LPM entry

There are 2 chains in PDB entry 3LPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5GLY 249
B
 LYS 5GLY 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3LPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 44Right-handed alpha
Helix 2
2
A
61 69Right-handed alpha
Helix 3
3
A
81 95Right-handed alpha
Helix 4
4
A
107 114Right-handed 310
Helix 5
5
A
152 165Right-handed alpha
Helix 6
6
A
180 191Right-handed alpha
Helix 7
7
A
240 249Right-handed alpha
Helix 8
8
B
34 44Right-handed alpha
Helix 9
9
B
61 69Right-handed alpha
Helix 10
10
B
81 96Right-handed alpha
Helix 11
11
B
107 114Right-handed 310
Helix 12
12
B
153 165Right-handed alpha
Helix 13
13
B
177 179Right-handed 310
Helix 14
14
B
180 191Right-handed alpha
Helix 15
15
B
240 249Right-handed alpha
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There are 5 sheets in PDB entry 3LPM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
22 26anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
A
74 78parallel
Strand 3
A
52 55parallel
Strand 4
A
120 125parallel
Strand 5
A
166 176parallel
Strand 6
A
211 218anti-parallel
Strand 7
A
193 202anti-parallel
Strand 8
A
225 231parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
22 26anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 104first strand
Strand 2
B
74 78parallel
Strand 3
B
52 55parallel
Strand 4
B
120 125parallel
Strand 5
B
166 176parallel
Strand 6
B
211 218anti-parallel
Strand 7
B
193 202anti-parallel
Strand 8
B
225 226parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 104first strand
Strand 2
B
74 78parallel
Strand 3
B
52 55parallel
Strand 4
B
120 125parallel
Strand 5
B
166 176parallel
Strand 6
B
211 218anti-parallel
Strand 7
B
193 202anti-parallel
Strand 8
B
230 231parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il