Analysis of interatomic Contacts of Structural Units in PDB entry:
3LPP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3LPP entry

There are 4 chains in PDB entry 3LPP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 28	TRP 898
B	CYS 30	TRP 898
C	ARG 28	TRP 898
D	LEU 34	TRP 898

There are 92 helices in PDB entry 3LPP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	37	41	Right-handed 310
Helix 2	2	A	51	59	Right-handed alpha
Helix 3	3	A	183	185	Right-handed 310
Helix 4	4	A	297	310	Right-handed alpha
Helix 5	5	A	316	321	Right-handed 310
Helix 6	6	A	331	345	Right-handed alpha
Helix 7	7	A	355	359	Right-handed 310
Helix 8	8	A	374	385	Right-handed alpha
Helix 9	9	A	408	418	Right-handed alpha
Helix 10	10	A	446	464	Right-handed alpha
Helix 11	11	A	501	505	Right-handed 310
Helix 12	12	A	522	526	Right-handed alpha
Helix 13	13	A	528	545	Right-handed alpha
Helix 14	14	A	560	564	Right-handed 310
Helix 15	15	A	575	592	Right-handed alpha
Helix 16	16	A	609	621	Right-handed alpha
Helix 17	17	A	638	643	Right-handed 310
Helix 18	18	A	646	662	Right-handed alpha
Helix 19	19	A	662	677	Right-handed alpha
Helix 20	20	A	684	689	Right-handed alpha
Helix 21	21	A	691	697	Right-handed 310
Helix 22	22	A	772	777	Right-handed alpha
Helix 23	23	A	806	811	Right-handed alpha
Helix 24	24	A	834	839	Right-handed 310
Helix 25	25	B	37	41	Right-handed 310
Helix 26	26	B	51	59	Right-handed alpha
Helix 27	27	B	183	185	Right-handed 310
Helix 28	28	B	297	310	Right-handed alpha
Helix 29	29	B	316	321	Right-handed 310
Helix 30	30	B	331	346	Right-handed alpha
Helix 31	31	B	355	359	Right-handed 310
Helix 32	32	B	374	385	Right-handed alpha
Helix 33	33	B	408	418	Right-handed alpha
Helix 34	34	B	446	464	Right-handed alpha
Helix 35	35	B	501	505	Right-handed 310
Helix 36	36	B	522	526	Right-handed alpha
Helix 37	37	B	528	545	Right-handed alpha
Helix 38	38	B	560	564	Right-handed 310
Helix 39	39	B	575	592	Right-handed alpha
Helix 40	40	B	609	621	Right-handed alpha
Helix 41	41	B	638	643	Right-handed 310
Helix 42	42	B	646	662	Right-handed alpha
Helix 43	43	B	662	677	Right-handed alpha
Helix 44	44	B	683	689	Right-handed alpha
Helix 45	45	B	691	697	Right-handed 310
Helix 46	46	B	772	777	Right-handed alpha
Helix 47	47	B	834	839	Right-handed 310
Helix 48	48	C	37	41	Right-handed 310
Helix 49	49	C	51	59	Right-handed alpha
Helix 50	50	C	297	310	Right-handed alpha
Helix 51	51	C	316	321	Right-handed 310
Helix 52	52	C	331	345	Right-handed alpha
Helix 53	53	C	355	359	Right-handed 310
Helix 54	54	C	374	384	Right-handed alpha
Helix 55	55	C	408	417	Right-handed alpha
Helix 56	56	C	446	464	Right-handed alpha
Helix 57	57	C	501	505	Right-handed 310
Helix 58	58	C	521	526	Right-handed alpha
Helix 59	59	C	528	545	Right-handed alpha
Helix 60	60	C	560	564	Right-handed 310
Helix 61	61	C	575	592	Right-handed alpha
Helix 62	62	C	609	621	Right-handed alpha
Helix 63	63	C	638	643	Right-handed 310
Helix 64	64	C	646	662	Right-handed alpha
Helix 65	65	C	662	677	Right-handed alpha
Helix 66	66	C	683	689	Right-handed alpha
Helix 67	67	C	691	697	Right-handed 310
Helix 68	68	C	772	777	Right-handed alpha
Helix 69	69	C	806	811	Right-handed alpha
Helix 70	70	C	834	839	Right-handed 310
Helix 71	71	D	37	41	Right-handed 310
Helix 72	72	D	51	59	Right-handed alpha
Helix 73	73	D	297	310	Right-handed alpha
Helix 74	74	D	316	321	Right-handed 310
Helix 75	75	D	331	345	Right-handed alpha
Helix 76	76	D	355	363	Right-handed 310
Helix 77	77	D	374	385	Right-handed alpha
Helix 78	78	D	408	417	Right-handed alpha
Helix 79	79	D	446	462	Right-handed alpha
Helix 80	80	D	501	505	Right-handed 310
Helix 81	81	D	522	526	Right-handed alpha
Helix 82	82	D	528	545	Right-handed alpha
Helix 83	83	D	560	564	Right-handed 310
Helix 84	84	D	575	592	Right-handed alpha
Helix 85	85	D	609	621	Right-handed alpha
Helix 86	86	D	638	643	Right-handed 310
Helix 87	87	D	646	662	Right-handed alpha
Helix 88	88	D	662	677	Right-handed alpha
Helix 89	89	D	683	689	Right-handed alpha
Helix 90	90	D	691	697	Right-handed 310
Helix 91	91	D	772	779	Right-handed alpha
Helix 92	92	D	836	839	Right-handed 310

There are 45 sheets in PDB entry 3LPP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	73	74	anti-parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	88	first strand
Strand 2	A	93	99	anti-parallel
Strand 3	A	112	121	anti-parallel
Strand 4	A	124	130	anti-parallel
Strand 5	A	288	295	anti-parallel
Strand 6	A	258	263	anti-parallel
Strand 7	A	245	251	anti-parallel
Strand 8	A	205	209	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	162	first strand
Strand 2	A	167	172	anti-parallel
Strand 3	A	177	181	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	190	first strand
Strand 2	A	193	199	anti-parallel
Strand 3	A	278	283	anti-parallel
Strand 4	A	269	274	anti-parallel
Strand 5	A	223	227	anti-parallel

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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	598	first strand
Strand 2	A	566	568	parallel
Strand 3	A	552	554	parallel
Strand 4	A	468	471	parallel
Strand 5	A	388	393	parallel
Strand 6	A	351	354	parallel
Strand 7	A	323	324	parallel
Strand 8	A	627	628	parallel
Strand 9	A	600	601	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	437	440	anti-parallel
Strand 3	A	432	434	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	517	first strand
Strand 2	A	520	521	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	701	703	anti-parallel
Strand 3	A	707	710	anti-parallel
Strand 4	A	755	759	anti-parallel
Strand 5	A	729	731	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	724	first strand
Strand 2	A	743	748	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	762	767	first strand
Strand 2	A	781	786	anti-parallel
Strand 3	A	841	848	parallel
Strand 4	A	880	883	anti-parallel
Strand 5	A	872	875	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	762	767	first strand
Strand 2	A	781	786	anti-parallel
Strand 3	A	841	848	parallel
Strand 4	A	888	889	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	792	799	first strand
Strand 2	A	814	821	anti-parallel
Strand 3	A	824	832	anti-parallel
Strand 4	A	894	897	anti-parallel
Strand 5	A	857	861	anti-parallel
Strand 6	A	867	869	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	73	74	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	89	first strand
Strand 2	B	92	99	anti-parallel
Strand 3	B	112	119	anti-parallel
Strand 4	B	124	130	anti-parallel
Strand 5	B	288	295	anti-parallel
Strand 6	B	258	263	anti-parallel
Strand 7	B	245	251	anti-parallel
Strand 8	B	205	209	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	162	first strand
Strand 2	B	167	172	anti-parallel
Strand 3	B	177	181	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	190	first strand
Strand 2	B	193	199	anti-parallel
Strand 3	B	278	283	anti-parallel
Strand 4	B	269	274	anti-parallel
Strand 5	B	223	227	anti-parallel

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There are 9 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	598	first strand
Strand 2	B	566	568	parallel
Strand 3	B	552	554	parallel
Strand 4	B	468	471	parallel
Strand 5	B	388	393	parallel
Strand 6	B	351	354	parallel
Strand 7	B	323	324	parallel
Strand 8	B	627	628	parallel
Strand 9	B	600	601	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	437	440	anti-parallel
Strand 3	B	431	434	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	517	first strand
Strand 2	B	520	521	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	682	first strand
Strand 2	B	701	703	anti-parallel
Strand 3	B	707	710	anti-parallel
Strand 4	B	755	759	anti-parallel
Strand 5	B	729	731	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	724	first strand
Strand 2	B	743	748	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	762	767	first strand
Strand 2	B	781	786	anti-parallel
Strand 3	B	841	848	parallel
Strand 4	B	880	883	anti-parallel
Strand 5	B	872	875	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	762	767	first strand
Strand 2	B	781	786	anti-parallel
Strand 3	B	841	848	parallel
Strand 4	B	888	889	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	793	799	first strand
Strand 2	B	814	821	anti-parallel
Strand 3	B	824	832	anti-parallel
Strand 4	B	894	897	anti-parallel
Strand 5	B	857	861	anti-parallel
Strand 6	B	867	869	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	73	74	anti-parallel

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There are 8 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	88	first strand
Strand 2	C	93	99	anti-parallel
Strand 3	C	112	119	anti-parallel
Strand 4	C	124	130	anti-parallel
Strand 5	C	288	295	anti-parallel
Strand 6	C	258	263	anti-parallel
Strand 7	C	245	251	anti-parallel
Strand 8	C	205	209	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	162	first strand
Strand 2	C	167	172	anti-parallel
Strand 3	C	177	181	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	190	first strand
Strand 2	C	193	199	anti-parallel
Strand 3	C	278	283	anti-parallel
Strand 4	C	269	274	anti-parallel
Strand 5	C	223	227	anti-parallel

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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	597	598	first strand
Strand 2	C	566	568	parallel
Strand 3	C	552	554	parallel
Strand 4	C	468	471	parallel
Strand 5	C	388	393	parallel
Strand 6	C	351	354	parallel
Strand 7	C	323	324	parallel
Strand 8	C	627	628	parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	398	first strand
Strand 2	C	437	440	anti-parallel
Strand 3	C	432	434	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	701	703	anti-parallel
Strand 3	C	707	710	anti-parallel
Strand 4	C	755	759	anti-parallel
Strand 5	C	729	731	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	719	724	first strand
Strand 2	C	743	748	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	762	767	first strand
Strand 2	C	781	786	anti-parallel
Strand 3	C	841	848	parallel
Strand 4	C	880	883	anti-parallel
Strand 5	C	872	875	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	762	767	first strand
Strand 2	C	781	786	anti-parallel
Strand 3	C	841	848	parallel
Strand 4	C	888	889	anti-parallel

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There are 6 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	793	799	first strand
Strand 2	C	814	821	anti-parallel
Strand 3	C	824	832	anti-parallel
Strand 4	C	894	897	anti-parallel
Strand 5	C	857	861	anti-parallel
Strand 6	C	867	869	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	73	74	anti-parallel

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There are 8 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	88	first strand
Strand 2	D	93	99	anti-parallel
Strand 3	D	112	119	anti-parallel
Strand 4	D	124	130	anti-parallel
Strand 5	D	288	295	anti-parallel
Strand 6	D	258	263	anti-parallel
Strand 7	D	245	251	anti-parallel
Strand 8	D	205	209	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	162	first strand
Strand 2	D	167	172	anti-parallel
Strand 3	D	177	181	anti-parallel

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There are 5 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	190	first strand
Strand 2	D	193	199	anti-parallel
Strand 3	D	278	283	anti-parallel
Strand 4	D	269	274	anti-parallel
Strand 5	D	223	227	anti-parallel

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There are 9 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	597	598	first strand
Strand 2	D	566	568	parallel
Strand 3	D	552	554	parallel
Strand 4	D	468	471	parallel
Strand 5	D	388	393	parallel
Strand 6	D	351	354	parallel
Strand 7	D	323	324	parallel
Strand 8	D	627	628	parallel
Strand 9	D	600	601	parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	398	first strand
Strand 2	D	437	440	anti-parallel
Strand 3	D	431	434	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	516	517	first strand
Strand 2	D	520	521	anti-parallel

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There are 5 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	682	first strand
Strand 2	D	701	703	anti-parallel
Strand 3	D	707	710	anti-parallel
Strand 4	D	755	759	anti-parallel
Strand 5	D	729	731	anti-parallel

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There are 2 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	719	724	first strand
Strand 2	D	743	748	anti-parallel

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There are 10 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	858	860	first strand
Strand 2	D	894	897	anti-parallel
Strand 3	D	824	832	anti-parallel
Strand 4	D	814	821	anti-parallel
Strand 5	D	793	799	anti-parallel
Strand 6	D	762	767	parallel
Strand 7	D	781	786	anti-parallel
Strand 8	D	841	848	parallel
Strand 9	D	880	889	anti-parallel
Strand 10	D	872	875	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3LPP

Analysis of interatomic Contacts of Structural Units in PDB entry:
3LPP