Analysis of interatomic Contacts of Structural Units in PDB entry:
3LPX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LPX entry

There are 2 chains in PDB entry 3LPX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33THR 522
B
 ALA 33THR 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3LPX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 55Right-handed alpha
Helix 2
2
A
66 77Right-handed alpha
Helix 3
3
A
83 92Right-handed alpha
Helix 4
4
A
119 122Right-handed 310
Helix 5
5
A
128 133Right-handed alpha
Helix 6
6
A
164 170Right-handed alpha
Helix 7
7
A
186 200Right-handed alpha
Helix 8
8
A
204 212Right-handed alpha
Helix 9
9
A
225 236Right-handed alpha
Helix 10
10
A
269 283Right-handed alpha
Helix 11
11
A
312 324Right-handed alpha
Helix 12
12
A
346 389Right-handed alpha
Helix 13
13
A
389 395Right-handed alpha
Helix 14
14
A
402 412Right-handed alpha
Helix 15
15
A
451 460Right-handed alpha
Helix 16
16
A
462 466Right-handed 310
Helix 17
17
A
467 494Right-handed alpha
Helix 18
18
A
494 514Right-handed alpha
Helix 19
19
B
42 56Right-handed alpha
Helix 20
20
B
66 77Right-handed alpha
Helix 21
21
B
83 93Right-handed alpha
Helix 22
22
B
128 135Right-handed alpha
Helix 23
23
B
164 170Right-handed alpha
Helix 24
24
B
186 200Right-handed alpha
Helix 25
25
B
204 212Right-handed alpha
Helix 26
26
B
225 236Right-handed alpha
Helix 27
27
B
269 283Right-handed alpha
Helix 28
28
B
312 324Right-handed alpha
Helix 29
29
B
346 387Right-handed alpha
Helix 30
30
B
389 399Right-handed alpha
Helix 31
31
B
403 409Right-handed alpha
Helix 32
32
B
451 460Right-handed alpha
Helix 33
33
B
462 466Right-handed 310
Helix 34
34
B
467 494Right-handed alpha
Helix 35
35
B
494 514Right-handed alpha
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There are 8 sheets in PDB entry 3LPX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
124 127anti-parallel
Strand 3
A
103 106anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
154 156anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 333first strand
Strand 2
A
237 243anti-parallel
Strand 3
A
222 223anti-parallel
Strand 4
A
520 521parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 250first strand
Strand 2
A
257 263anti-parallel
Strand 3
A
303 307anti-parallel
Strand 4
A
289 294anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
342 344anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
124 127anti-parallel
Strand 3
B
103 106anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 333first strand
Strand 2
B
237 243anti-parallel
Strand 3
B
222 224anti-parallel
Strand 4
B
520 522parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 249first strand
Strand 2
B
257 263anti-parallel
Strand 3
B
303 307anti-parallel
Strand 4
B
289 294anti-parallel
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