Analysis of interatomic Contacts of Structural Units in PDB entry:
3LQ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LQ1 entry

There are 2 chains in PDB entry 3LQ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LYS 555
B
 THR 2LYS 555
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3LQ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 22Right-handed alpha
Helix 2
2
A
35 45Right-handed alpha
Helix 3
3
A
55 71Right-handed alpha
Helix 4
4
A
81 86Right-handed alpha
Helix 5
5
A
87 97Right-handed alpha
Helix 6
6
A
109 113Right-handed 310
Helix 7
7
A
127 131Right-handed 310
Helix 8
8
A
143 163Right-handed alpha
Helix 9
9
A
208 219Right-handed alpha
Helix 10
10
A
236 248Right-handed alpha
Helix 11
11
A
255 258Right-handed 310
Helix 12
12
A
272 277Right-handed alpha
Helix 13
13
A
279 286Right-handed alpha
Helix 14
14
A
300 310Right-handed alpha
Helix 15
15
A
338 350Right-handed alpha
Helix 16
16
A
356 378Right-handed alpha
Helix 17
17
A
387 397Right-handed alpha
Helix 18
18
A
408 418Right-handed alpha
Helix 19
19
A
438 447Right-handed alpha
Helix 20
20
A
459 465Right-handed alpha
Helix 21
21
A
466 468Right-handed 310
Helix 22
22
A
469 475Right-handed alpha
Helix 23
23
A
516 523Right-handed alpha
Helix 24
24
A
532 544Right-handed alpha
Helix 25
25
B
3 23Right-handed alpha
Helix 26
26
B
35 44Right-handed alpha
Helix 27
27
B
55 71Right-handed alpha
Helix 28
28
B
81 86Right-handed alpha
Helix 29
29
B
87 97Right-handed alpha
Helix 30
30
B
109 113Right-handed 310
Helix 31
31
B
127 131Right-handed 310
Helix 32
32
B
143 163Right-handed alpha
Helix 33
33
B
208 219Right-handed alpha
Helix 34
34
B
236 248Right-handed alpha
Helix 35
35
B
272 277Right-handed alpha
Helix 36
36
B
279 286Right-handed alpha
Helix 37
37
B
300 310Right-handed alpha
Helix 38
38
B
338 350Right-handed alpha
Helix 39
39
B
356 378Right-handed alpha
Helix 40
40
B
385 397Right-handed alpha
Helix 41
41
B
409 418Right-handed alpha
Helix 42
42
B
438 447Right-handed alpha
Helix 43
43
B
459 465Right-handed alpha
Helix 44
44
B
466 468Right-handed 310
Helix 45
45
B
469 475Right-handed alpha
Helix 46
46
B
515 523Right-handed alpha
Helix 47
47
B
532 545Right-handed alpha
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There are 7 sheets in PDB entry 3LQ1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
26 29parallel
Strand 3
A
74 78parallel
Strand 4
A
101 107parallel
Strand 5
A
169 174parallel
Strand 6
A
133 136parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 207first strand
Strand 2
B
203 207anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
251 253parallel
Strand 3
A
224 228parallel
Strand 4
A
290 294parallel
Strand 5
A
314 318parallel
Strand 6
A
333 335parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 428first strand
Strand 2
A
400 405parallel
Strand 3
A
453 458parallel
Strand 4
A
479 484parallel
Strand 5
A
549 554parallel
Strand 6
A
526 529parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
26 29parallel
Strand 3
B
74 78parallel
Strand 4
B
101 107parallel
Strand 5
B
169 174parallel
Strand 6
B
133 136parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 270first strand
Strand 2
B
251 253parallel
Strand 3
B
224 228parallel
Strand 4
B
290 294parallel
Strand 5
B
314 318parallel
Strand 6
B
333 335parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 428first strand
Strand 2
B
400 405parallel
Strand 3
B
453 458parallel
Strand 4
B
479 484parallel
Strand 5
B
549 554parallel
Strand 6
B
526 530parallel
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