Analysis of interatomic Contacts of Structural Units in PDB entry:
3LQ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LQ6 entry

There are 2 chains in PDB entry 3LQ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 228LYS 540
B
 ARG 228LYS 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 3LQ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
236 240Right-handed 310
Helix 2
2
A
282 286Right-handed 310
Helix 3
3
A
454 465Right-handed alpha
Helix 4
4
B
236 240Right-handed 310
Helix 5
5
B
282 286Right-handed 310
Helix 6
6
B
454 465Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3LQ6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 451first strand
Strand 2
A
431 440anti-parallel
Strand 3
A
251 254anti-parallel
Strand 4
A
507 508anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 295first strand
Strand 2
A
305 310anti-parallel
Strand 3
A
373 381anti-parallel
Strand 4
A
352 358anti-parallel
Strand 5
A
332 341anti-parallel
Strand 6
A
389 402anti-parallel
Strand 7
A
289 295anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 429first strand
Strand 2
A
496 500anti-parallel
Strand 3
A
485 492anti-parallel
Strand 4
A
472 478anti-parallel
Strand 5
A
514 521anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 451first strand
Strand 2
B
431 440anti-parallel
Strand 3
B
251 254anti-parallel
Strand 4
B
507 509anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 298first strand
Strand 2
B
302 310anti-parallel
Strand 3
B
373 378anti-parallel
Strand 4
B
352 358anti-parallel
Strand 5
B
332 341anti-parallel
Strand 6
B
389 402anti-parallel
Strand 7
B
289 298anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
427 429first strand
Strand 2
B
496 500anti-parallel
Strand 3
B
485 492anti-parallel
Strand 4
B
473 478anti-parallel
Strand 5
B
514 520anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il