Analysis of interatomic Contacts of Structural Units in PDB entry:
3LQ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LQ7 entry

There are 3 chains in PDB entry 3LQ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 15ALA 227
B
 LYS 14ALA 227
C
 GLU 12VAL 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 3LQ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 46Right-handed alpha
Helix 2
2
A
85 96Right-handed alpha
Helix 3
3
A
104 121Right-handed alpha
Helix 4
4
A
121 136Right-handed alpha
Helix 5
5
A
141 165Right-handed alpha
Helix 6
6
A
175 187Right-handed alpha
Helix 7
7
A
192 196Right-handed 310
Helix 8
8
A
197 209Right-handed alpha
Helix 9
9
A
210 227Right-handed alpha
Helix 10
10
B
35 46Right-handed alpha
Helix 11
11
B
85 97Right-handed alpha
Helix 12
12
B
104 121Right-handed alpha
Helix 13
13
B
121 134Right-handed alpha
Helix 14
14
B
141 165Right-handed alpha
Helix 15
15
B
175 186Right-handed alpha
Helix 16
16
B
187 189Right-handed 310
Helix 17
17
B
192 196Right-handed 310
Helix 18
18
B
197 209Right-handed alpha
Helix 19
19
B
210 227Right-handed alpha
Helix 20
20
C
34 46Right-handed alpha
Helix 21
21
C
85 96Right-handed alpha
Helix 22
22
C
104 121Right-handed alpha
Helix 23
23
C
122 136Right-handed alpha
Helix 24
24
C
142 165Right-handed alpha
Helix 25
25
C
175 186Right-handed alpha
Helix 26
26
C
187 189Right-handed 310
Helix 27
27
C
193 196Right-handed 310
Helix 28
28
C
197 209Right-handed alpha
Helix 29
29
C
210 222Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3LQ7. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 54first strand
Strand 2
A
18 22parallel
Strand 3
A
76 78anti-parallel
Strand 4
A
81 83anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 54first strand
Strand 2
B
18 22parallel
Strand 3
B
76 78anti-parallel
Strand 4
B
81 83anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 54first strand
Strand 2
C
18 22parallel
Strand 3
C
75 78anti-parallel
Strand 4
C
81 83anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il