Analysis of interatomic Contacts of Structural Units in PDB entry:
3LQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LQJ entry

There are 6 chains in PDB entry 3LQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1565PRO 1779
B
 SER 1565GLU 1778
Q
 ALA 1THR 3
Q
 GLN 5THR 6
T
 ALA 1THR 3
T
 GLN 5THR 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3LQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1598 1601Right-handed 310
Helix 2
2
A
1603 1611Right-handed alpha
Helix 3
3
A
1630 1653Right-handed alpha
Helix 4
4
A
1657 1661Right-handed 310
Helix 5
5
A
1707 1717Right-handed alpha
Helix 6
6
A
1722 1740Right-handed alpha
Helix 7
7
A
1748 1766Right-handed alpha
Helix 8
8
B
1598 1601Right-handed 310
Helix 9
9
B
1603 1611Right-handed alpha
Helix 10
10
B
1630 1652Right-handed alpha
Helix 11
11
B
1653 1661Right-handed 310
Helix 12
12
B
1707 1717Right-handed alpha
Helix 13
13
B
1722 1740Right-handed alpha
Helix 14
14
B
1744 1766Right-handed alpha
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There are 2 sheets in PDB entry 3LQJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1594 1596first strand
Strand 2
A
1585 1587anti-parallel
Strand 3
Q
2 3anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1594 1596first strand
Strand 2
B
1585 1587anti-parallel
Strand 3
T
2 3anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il