Analysis of interatomic Contacts of Structural Units in PDB entry:
3LQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LQR entry

There are 2 chains in PDB entry 3LQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 543
B
 MET 1LEU 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 3LQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 13Right-handed alpha
Helix 2
2
A
23 33Right-handed alpha
Helix 3
3
A
37 46Right-handed alpha
Helix 4
4
A
49 65Right-handed alpha
Helix 5
5
A
71 76Right-handed alpha
Helix 6
6
A
80 96Right-handed alpha
Helix 7
7
A
100 105Right-handed alpha
Helix 8
8
A
106 110Right-handed 310
Helix 9
9
A
111 122Right-handed alpha
Helix 10
10
A
133 146Right-handed alpha
Helix 11
11
A
164 175Right-handed alpha
Helix 12
12
A
198 212Right-handed alpha
Helix 13
13
A
227 240Right-handed alpha
Helix 14
14
A
255 264Right-handed alpha
Helix 15
15
A
275 279Right-handed 310
Helix 16
16
A
294 305Right-handed alpha
Helix 17
17
A
316 326Right-handed alpha
Helix 18
18
A
329 338Right-handed alpha
Helix 19
19
A
344 357Right-handed alpha
Helix 20
20
A
358 363Right-handed 310
Helix 21
21
A
373 384Right-handed alpha
Helix 22
22
A
386 395Right-handed alpha
Helix 23
23
A
407 412Right-handed alpha
Helix 24
24
A
427 438Right-handed alpha
Helix 25
25
A
458 466Right-handed alpha
Helix 26
26
A
469 484Right-handed alpha
Helix 27
27
A
533 535Right-handed 310
Helix 28
28
A
536 542Right-handed alpha
Helix 29
29
B
3 13Right-handed alpha
Helix 30
30
B
23 33Right-handed alpha
Helix 31
31
B
37 46Right-handed alpha
Helix 32
32
B
49 65Right-handed alpha
Helix 33
33
B
71 76Right-handed alpha
Helix 34
34
B
80 96Right-handed alpha
Helix 35
35
B
115 121Right-handed alpha
Helix 36
36
B
133 146Right-handed alpha
Helix 37
37
B
164 175Right-handed alpha
Helix 38
38
B
198 212Right-handed alpha
Helix 39
39
B
227 239Right-handed alpha
Helix 40
40
B
254 264Right-handed alpha
Helix 41
41
B
275 279Right-handed 310
Helix 42
42
B
294 305Right-handed alpha
Helix 43
43
B
316 326Right-handed alpha
Helix 44
44
B
329 338Right-handed alpha
Helix 45
45
B
344 357Right-handed alpha
Helix 46
46
B
358 363Right-handed 310
Helix 47
47
B
373 384Right-handed alpha
Helix 48
48
B
386 395Right-handed alpha
Helix 49
49
B
407 412Right-handed alpha
Helix 50
50
B
427 438Right-handed alpha
Helix 51
51
B
458 466Right-handed alpha
Helix 52
52
B
469 484Right-handed alpha
Helix 53
53
B
533 535Right-handed 310
Helix 54
54
B
536 541Right-handed alpha
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There are 4 sheets in PDB entry 3LQR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 191first strand
Strand 2
A
245 252parallel
Strand 3
A
267 272parallel
Strand 4
A
153 158parallel
Strand 5
A
285 287parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 406first strand
Strand 2
A
453 454anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 191first strand
Strand 2
B
245 252parallel
Strand 3
B
267 272parallel
Strand 4
B
153 158parallel
Strand 5
B
285 287parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 406first strand
Strand 2
B
453 454anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il