Analysis of interatomic Contacts of Structural Units in PDB entry:
3LQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LQY entry

There are 2 chains in PDB entry 3LQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0MSE 124
A
 ILE 126GLY 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3LQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed 310
Helix 2
2
A
31 49Right-handed alpha
Helix 3
3
A
72 76Right-handed 310
Helix 4
4
A
78 82Right-handed 310
Helix 5
5
A
102 110Right-handed alpha
Helix 6
6
A
124 137Right-handed alpha
Helix 7
7
A
160 173Right-handed alpha
Helix 8
8
A
181 187Right-handed alpha
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There are 2 sheets in PDB entry 3LQY. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
53 58parallel
Strand 3
A
7 12parallel
Strand 4
A
114 120parallel
Strand 5
A
139 148parallel
Strand 6
A
178 180parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
157 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il