Analysis of interatomic Contacts of Structural Units in PDB entry:
3LRH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LRH entry

There are 16 chains in PDB entry 3LRH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2LEU 110
B
 GLU 5GLN 18
C
 PRO 2LEU 110
D
 GLU 5GLN 18
E
 SER -1SER 111
F
 GLU 5GLN 18
G
 PRO 2LEU 110
H
 GLU 5GLN 18
I
 PRO 2SER 111
J
 GLU 5GLN 18
K
 PRO 2LEU 110
L
 GLU 5GLN 18
M
 PRO 2SER 111
N
 GLU 5GLN 18
O
 SER -1LEU 110
P
 GLU 5GLN 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3LRH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
80 84Right-handed 310
Helix 2
2
B
5 18Right-handed alpha
Helix 3
3
C
80 84Right-handed 310
Helix 4
4
D
5 18Right-handed alpha
Helix 5
5
E
80 84Right-handed 310
Helix 6
6
F
5 18Right-handed alpha
Helix 7
7
G
80 84Right-handed 310
Helix 8
8
H
5 18Right-handed alpha
Helix 9
9
I
80 84Right-handed 310
Helix 10
10
J
5 18Right-handed alpha
Helix 11
11
K
80 84Right-handed 310
Helix 12
12
L
5 18Right-handed alpha
Helix 13
13
M
80 84Right-handed 310
Helix 14
14
N
5 18Right-handed alpha
Helix 15
15
O
80 84Right-handed 310
Helix 16
16
P
5 18Right-handed alpha
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There are 24 sheets in PDB entry 3LRH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
71 76anti-parallel
Strand 4
A
63 68anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
105 108parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
35 39anti-parallel
Strand 5
A
46 50anti-parallel
Strand 6
A
54 55anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
105 108parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
98 101anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
18 23anti-parallel
Strand 3
C
71 76anti-parallel
Strand 4
C
63 68anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
105 109parallel
Strand 3
C
86 93anti-parallel
Strand 4
C
35 39anti-parallel
Strand 5
C
46 50anti-parallel
Strand 6
C
54 55anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
105 109parallel
Strand 3
C
86 93anti-parallel
Strand 4
C
98 101anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 6first strand
Strand 2
E
18 23anti-parallel
Strand 3
E
71 76anti-parallel
Strand 4
E
63 68anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 12first strand
Strand 2
E
105 109parallel
Strand 3
E
86 93anti-parallel
Strand 4
E
35 39anti-parallel
Strand 5
E
46 50anti-parallel
Strand 6
E
54 55anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 12first strand
Strand 2
E
105 109parallel
Strand 3
E
86 93anti-parallel
Strand 4
E
98 101anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
5 6first strand
Strand 2
G
18 23anti-parallel
Strand 3
G
71 76anti-parallel
Strand 4
G
63 68anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
9 12first strand
Strand 2
G
105 109parallel
Strand 3
G
86 93anti-parallel
Strand 4
G
34 39anti-parallel
Strand 5
G
46 50anti-parallel
Strand 6
G
54 55anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
9 12first strand
Strand 2
G
105 109parallel
Strand 3
G
86 93anti-parallel
Strand 4
G
98 101anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
5 6first strand
Strand 2
I
18 23anti-parallel
Strand 3
I
71 76anti-parallel
Strand 4
I
63 68anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
9 12first strand
Strand 2
I
105 109parallel
Strand 3
I
86 93anti-parallel
Strand 4
I
35 39anti-parallel
Strand 5
I
46 50anti-parallel
Strand 6
I
54 55anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
9 12first strand
Strand 2
I
105 109parallel
Strand 3
I
86 93anti-parallel
Strand 4
I
98 101anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
5 6first strand
Strand 2
K
18 23anti-parallel
Strand 3
K
71 76anti-parallel
Strand 4
K
63 68anti-parallel
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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
9 12first strand
Strand 2
K
105 109parallel
Strand 3
K
86 93anti-parallel
Strand 4
K
35 39anti-parallel
Strand 5
K
46 50anti-parallel
Strand 6
K
54 55anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
9 12first strand
Strand 2
K
105 109parallel
Strand 3
K
86 93anti-parallel
Strand 4
K
98 101anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
5 6first strand
Strand 2
M
18 23anti-parallel
Strand 3
M
71 76anti-parallel
Strand 4
M
63 68anti-parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
9 12first strand
Strand 2
M
105 109parallel
Strand 3
M
86 92anti-parallel
Strand 4
M
34 39anti-parallel
Strand 5
M
45 50anti-parallel
Strand 6
M
54 55anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
9 12first strand
Strand 2
M
105 109parallel
Strand 3
M
86 92anti-parallel
Strand 4
M
99 101anti-parallel
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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
9 12first strand
Strand 2
O
105 109parallel
Strand 3
O
86 93anti-parallel
Strand 4
O
35 39anti-parallel
Strand 5
O
46 50anti-parallel
Strand 6
O
54 55anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
9 12first strand
Strand 2
O
105 109parallel
Strand 3
O
86 93anti-parallel
Strand 4
O
98 101anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
18 23first strand
Strand 2
O
71 76anti-parallel
Strand 3
O
63 68anti-parallel
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