Analysis of interatomic Contacts of Structural Units in PDB entry:
3LS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LS8 entry

There are 2 chains in PDB entry 3LS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 282PHE 871
B
 LEU 296PHE 871
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 3LS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
282 286Right-handed 310
Helix 2
2
A
289 302Right-handed alpha
Helix 3
3
A
309 319Right-handed alpha
Helix 4
4
A
319 324Right-handed alpha
Helix 5
5
A
325 328Right-handed 310
Helix 6
6
A
329 335Right-handed alpha
Helix 7
7
A
341 355Right-handed alpha
Helix 8
8
A
359 364Right-handed alpha
Helix 9
9
A
365 368Right-handed 310
Helix 10
10
A
373 385Right-handed alpha
Helix 11
11
A
388 395Right-handed alpha
Helix 12
12
A
395 403Right-handed alpha
Helix 13
13
A
404 406Right-handed 310
Helix 14
14
A
407 414Right-handed alpha
Helix 15
15
A
441 445Right-handed 310
Helix 16
16
A
474 485Right-handed alpha
Helix 17
17
A
486 503Right-handed alpha
Helix 18
18
A
503 510Right-handed alpha
Helix 19
19
A
510 531Right-handed alpha
Helix 20
20
A
532 562Right-handed alpha
Helix 21
21
A
565 579Right-handed alpha
Helix 22
22
A
579 584Right-handed alpha
Helix 23
23
A
606 609Right-handed 310
Helix 24
24
A
641 661Right-handed alpha
Helix 25
25
A
690 697Right-handed alpha
Helix 26
26
A
699 708Right-handed alpha
Helix 27
27
A
713 717Right-handed 310
Helix 28
28
A
718 740Right-handed alpha
Helix 29
29
A
780 787Right-handed alpha
Helix 30
30
A
792 812Right-handed alpha
Helix 31
31
A
812 822Right-handed alpha
Helix 32
32
A
828 833Right-handed alpha
Helix 33
33
A
834 836Right-handed 310
Helix 34
34
A
837 846Right-handed alpha
Helix 35
35
A
851 871Right-handed alpha
Helix 36
36
B
296 302Right-handed alpha
Helix 37
37
B
309 319Right-handed alpha
Helix 38
38
B
319 324Right-handed alpha
Helix 39
39
B
325 328Right-handed 310
Helix 40
40
B
329 335Right-handed alpha
Helix 41
41
B
341 355Right-handed alpha
Helix 42
42
B
359 364Right-handed alpha
Helix 43
43
B
365 368Right-handed 310
Helix 44
44
B
373 385Right-handed alpha
Helix 45
45
B
388 395Right-handed alpha
Helix 46
46
B
395 403Right-handed alpha
Helix 47
47
B
404 406Right-handed 310
Helix 48
48
B
407 414Right-handed alpha
Helix 49
49
B
474 486Right-handed alpha
Helix 50
50
B
486 503Right-handed alpha
Helix 51
51
B
503 510Right-handed alpha
Helix 52
52
B
510 531Right-handed alpha
Helix 53
53
B
532 561Right-handed alpha
Helix 54
54
B
565 578Right-handed alpha
Helix 55
55
B
606 609Right-handed 310
Helix 56
56
B
641 661Right-handed alpha
Helix 57
57
B
690 698Right-handed alpha
Helix 58
58
B
699 708Right-handed alpha
Helix 59
59
B
713 717Right-handed 310
Helix 60
60
B
718 740Right-handed alpha
Helix 61
61
B
780 787Right-handed alpha
Helix 62
62
B
792 812Right-handed alpha
Helix 63
63
B
812 822Right-handed alpha
Helix 64
64
B
828 833Right-handed alpha
Helix 65
65
B
837 847Right-handed alpha
Helix 66
66
B
851 871Right-handed alpha
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There are 6 sheets in PDB entry 3LS8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
596 604anti-parallel
Strand 3
A
619 625anti-parallel
Strand 4
A
610 611anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
596 604anti-parallel
Strand 3
A
619 625anti-parallel
Strand 4
A
630 637anti-parallel
Strand 5
A
679 683anti-parallel
Strand 6
A
672 674anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 689first strand
Strand 2
A
749 751anti-parallel
Strand 3
A
757 759anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 593first strand
Strand 2
B
596 604anti-parallel
Strand 3
B
619 625anti-parallel
Strand 4
B
610 611anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 593first strand
Strand 2
B
596 604anti-parallel
Strand 3
B
619 625anti-parallel
Strand 4
B
630 637anti-parallel
Strand 5
B
679 683anti-parallel
Strand 6
B
672 674anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
688 689first strand
Strand 2
B
749 751anti-parallel
Strand 3
B
757 759anti-parallel
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