Analysis of interatomic Contacts of Structural Units in PDB entry:
3LSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LSV entry

There are 5 chains in PDB entry 3LSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5PHE 315
B
 VAL 5PHE 315
C
 VAL 5PHE 315
D
 VAL 5PHE 315
E
 VAL 5PHE 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 3LSV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 53Right-handed 310
Helix 2
2
A
55 60Right-handed alpha
Helix 3
3
A
67 71Right-handed 310
Helix 4
4
A
115 119Right-handed 310
Helix 5
5
A
146 149Right-handed 310
Helix 6
6
A
196 201Right-handed alpha
Helix 7
7
A
201 214Right-handed alpha
Helix 8
8
A
215 218Right-handed 310
Helix 9
9
A
220 245Right-handed alpha
Helix 10
10
A
253 282Right-handed alpha
Helix 11
11
A
284 315Right-handed alpha
Helix 12
12
B
50 53Right-handed 310
Helix 13
13
B
67 71Right-handed 310
Helix 14
14
B
115 119Right-handed 310
Helix 15
15
B
146 149Right-handed 310
Helix 16
16
B
196 201Right-handed alpha
Helix 17
17
B
201 214Right-handed alpha
Helix 18
18
B
215 218Right-handed 310
Helix 19
19
B
220 245Right-handed alpha
Helix 20
20
B
253 282Right-handed alpha
Helix 21
21
B
284 315Right-handed alpha
Helix 22
22
C
50 53Right-handed 310
Helix 23
23
C
55 60Right-handed alpha
Helix 24
24
C
67 71Right-handed 310
Helix 25
25
C
115 119Right-handed 310
Helix 26
26
C
146 149Right-handed 310
Helix 27
27
C
196 201Right-handed alpha
Helix 28
28
C
201 214Right-handed alpha
Helix 29
29
C
215 218Right-handed 310
Helix 30
30
C
220 245Right-handed alpha
Helix 31
31
C
253 282Right-handed alpha
Helix 32
32
C
284 315Right-handed alpha
Helix 33
33
D
50 53Right-handed 310
Helix 34
34
D
67 71Right-handed 310
Helix 35
35
D
115 119Right-handed 310
Helix 36
36
D
146 149Right-handed 310
Helix 37
37
D
196 201Right-handed alpha
Helix 38
38
D
201 214Right-handed alpha
Helix 39
39
D
215 218Right-handed 310
Helix 40
40
D
220 245Right-handed alpha
Helix 41
41
D
253 282Right-handed alpha
Helix 42
42
D
284 315Right-handed alpha
Helix 43
43
E
50 53Right-handed 310
Helix 44
44
E
55 60Right-handed alpha
Helix 45
45
E
67 71Right-handed 310
Helix 46
46
E
115 119Right-handed 310
Helix 47
47
E
146 149Right-handed 310
Helix 48
48
E
196 201Right-handed alpha
Helix 49
49
E
201 214Right-handed alpha
Helix 50
50
E
215 218Right-handed 310
Helix 51
51
E
220 245Right-handed alpha
Helix 52
52
E
253 282Right-handed alpha
Helix 53
53
E
284 315Right-handed alpha
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There are 15 sheets in PDB entry 3LSV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
86 94anti-parallel
Strand 3
A
99 111anti-parallel
Strand 4
A
36 48anti-parallel
Strand 5
A
16 31anti-parallel
Strand 6
A
140 144parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
86 94anti-parallel
Strand 3
A
99 111anti-parallel
Strand 4
A
36 48anti-parallel
Strand 5
A
16 31anti-parallel
Strand 6
A
150 151parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
123 133anti-parallel
Strand 3
A
180 192anti-parallel
Strand 4
A
160 175anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
86 94anti-parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
36 48anti-parallel
Strand 5
B
16 31anti-parallel
Strand 6
B
140 144parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
86 94anti-parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
36 48anti-parallel
Strand 5
B
16 31anti-parallel
Strand 6
B
150 151parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
123 133anti-parallel
Strand 3
B
180 192anti-parallel
Strand 4
B
160 175anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 65first strand
Strand 2
C
86 94anti-parallel
Strand 3
C
99 111anti-parallel
Strand 4
C
36 48anti-parallel
Strand 5
C
16 31anti-parallel
Strand 6
C
140 144parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 65first strand
Strand 2
C
86 94anti-parallel
Strand 3
C
99 111anti-parallel
Strand 4
C
36 48anti-parallel
Strand 5
C
16 31anti-parallel
Strand 6
C
150 151parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 78first strand
Strand 2
C
123 133anti-parallel
Strand 3
C
180 192anti-parallel
Strand 4
C
160 175anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 65first strand
Strand 2
D
86 94anti-parallel
Strand 3
D
99 111anti-parallel
Strand 4
D
36 48anti-parallel
Strand 5
D
16 31anti-parallel
Strand 6
D
140 144parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 65first strand
Strand 2
D
86 94anti-parallel
Strand 3
D
99 111anti-parallel
Strand 4
D
36 48anti-parallel
Strand 5
D
16 31anti-parallel
Strand 6
D
150 151parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 78first strand
Strand 2
D
123 133anti-parallel
Strand 3
D
180 192anti-parallel
Strand 4
D
160 175anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
64 65first strand
Strand 2
E
86 94anti-parallel
Strand 3
E
99 111anti-parallel
Strand 4
E
36 48anti-parallel
Strand 5
E
16 31anti-parallel
Strand 6
E
140 144parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
64 65first strand
Strand 2
E
86 94anti-parallel
Strand 3
E
99 111anti-parallel
Strand 4
E
36 48anti-parallel
Strand 5
E
16 31anti-parallel
Strand 6
E
150 151parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 78first strand
Strand 2
E
123 133anti-parallel
Strand 3
E
180 192anti-parallel
Strand 4
E
160 175anti-parallel
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