Analysis of interatomic Contacts of Structural Units in PDB entry:
3LUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LUB entry

There are 12 chains in PDB entry 3LUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1GLU 253
B
 MSE 1GLU 253
C
 MSE 1GLU 253
D
 MSE 1GLU 253
E
 MSE 1GLU 253
F
 GLY 0GLU 253
G
 MSE 1GLU 253
H
 MSE 1GLU 253
I
 MSE 1GLU 253
J
 MSE 1GLU 253
K
 MSE 1GLU 253
L
 MSE 1GLU 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are132 helices in PDB entry 3LUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed alpha
Helix 2
2
A
40 62Right-handed alpha
Helix 3
3
A
90 108Right-handed alpha
Helix 4
4
A
124 135Right-handed alpha
Helix 5
5
A
146 148Right-handed 310
Helix 6
6
A
164 175Right-handed alpha
Helix 7
7
A
176 179Right-handed 310
Helix 8
8
A
180 184Right-handed 310
Helix 9
9
A
194 199Right-handed alpha
Helix 10
10
A
207 212Right-handed alpha
Helix 11
11
A
224 249Right-handed alpha
Helix 12
12
B
11 16Right-handed alpha
Helix 13
13
B
40 62Right-handed alpha
Helix 14
14
B
90 108Right-handed alpha
Helix 15
15
B
124 135Right-handed alpha
Helix 16
16
B
146 148Right-handed 310
Helix 17
17
B
164 175Right-handed alpha
Helix 18
18
B
176 179Right-handed 310
Helix 19
19
B
180 184Right-handed 310
Helix 20
20
B
194 199Right-handed alpha
Helix 21
21
B
207 212Right-handed alpha
Helix 22
22
B
224 249Right-handed alpha
Helix 23
23
C
11 16Right-handed alpha
Helix 24
24
C
40 62Right-handed alpha
Helix 25
25
C
90 108Right-handed alpha
Helix 26
26
C
124 135Right-handed alpha
Helix 27
27
C
146 148Right-handed 310
Helix 28
28
C
164 175Right-handed alpha
Helix 29
29
C
176 179Right-handed 310
Helix 30
30
C
180 184Right-handed 310
Helix 31
31
C
194 199Right-handed alpha
Helix 32
32
C
207 212Right-handed alpha
Helix 33
33
C
224 249Right-handed alpha
Helix 34
34
D
11 16Right-handed alpha
Helix 35
35
D
40 62Right-handed alpha
Helix 36
36
D
90 108Right-handed alpha
Helix 37
37
D
124 135Right-handed alpha
Helix 38
38
D
146 148Right-handed 310
Helix 39
39
D
164 175Right-handed alpha
Helix 40
40
D
176 179Right-handed 310
Helix 41
41
D
180 184Right-handed 310
Helix 42
42
D
194 199Right-handed alpha
Helix 43
43
D
207 212Right-handed alpha
Helix 44
44
D
224 249Right-handed alpha
Helix 45
45
E
11 16Right-handed alpha
Helix 46
46
E
40 62Right-handed alpha
Helix 47
47
E
90 108Right-handed alpha
Helix 48
48
E
124 135Right-handed alpha
Helix 49
49
E
146 148Right-handed 310
Helix 50
50
E
164 175Right-handed alpha
Helix 51
51
E
176 179Right-handed 310
Helix 52
52
E
180 184Right-handed 310
Helix 53
53
E
194 199Right-handed alpha
Helix 54
54
E
207 212Right-handed alpha
Helix 55
55
E
224 249Right-handed alpha
Helix 56
56
F
11 16Right-handed alpha
Helix 57
57
F
40 62Right-handed alpha
Helix 58
58
F
90 108Right-handed alpha
Helix 59
59
F
124 135Right-handed alpha
Helix 60
60
F
146 148Right-handed 310
Helix 61
61
F
164 175Right-handed alpha
Helix 62
62
F
176 179Right-handed 310
Helix 63
63
F
180 184Right-handed 310
Helix 64
64
F
194 199Right-handed alpha
Helix 65
65
F
207 212Right-handed alpha
Helix 66
66
F
224 249Right-handed alpha
Helix 67
67
G
11 16Right-handed alpha
Helix 68
68
G
40 62Right-handed alpha
Helix 69
69
G
90 108Right-handed alpha
Helix 70
70
G
124 135Right-handed alpha
Helix 71
71
G
146 148Right-handed 310
Helix 72
72
G
164 175Right-handed alpha
Helix 73
73
G
176 179Right-handed 310
Helix 74
74
G
180 184Right-handed 310
Helix 75
75
G
194 199Right-handed alpha
Helix 76
76
G
207 212Right-handed alpha
Helix 77
77
G
224 249Right-handed alpha
Helix 78
78
H
11 16Right-handed alpha
Helix 79
79
H
40 62Right-handed alpha
Helix 80
80
H
90 108Right-handed alpha
Helix 81
81
H
124 135Right-handed alpha
Helix 82
82
H
146 148Right-handed 310
Helix 83
83
H
164 175Right-handed alpha
Helix 84
84
H
176 179Right-handed 310
Helix 85
85
H
180 184Right-handed 310
Helix 86
86
H
194 199Right-handed alpha
Helix 87
87
H
207 212Right-handed alpha
Helix 88
88
H
224 249Right-handed alpha
Helix 89
89
I
11 16Right-handed alpha
Helix 90
90
I
40 62Right-handed alpha
Helix 91
91
I
90 108Right-handed alpha
Helix 92
92
I
124 135Right-handed alpha
Helix 93
93
I
146 148Right-handed 310
Helix 94
94
I
164 175Right-handed alpha
Helix 95
95
I
176 179Right-handed 310
Helix 96
96
I
180 184Right-handed 310
Helix 97
97
I
194 199Right-handed alpha
Helix 98
98
I
207 212Right-handed alpha
Helix 99
99
I
224 249Right-handed alpha
Helix 100
100
J
11 16Right-handed alpha
Helix 101
101
J
40 62Right-handed alpha
Helix 102
102
J
90 108Right-handed alpha
Helix 103
103
J
124 135Right-handed alpha
Helix 104
104
J
146 148Right-handed 310
Helix 105
105
J
164 175Right-handed alpha
Helix 106
106
J
176 179Right-handed 310
Helix 107
107
J
180 184Right-handed 310
Helix 108
108
J
194 199Right-handed alpha
Helix 109
109
J
207 212Right-handed alpha
Helix 110
110
J
224 249Right-handed alpha
Helix 111
111
K
11 16Right-handed alpha
Helix 112
112
K
40 62Right-handed alpha
Helix 113
113
K
90 108Right-handed alpha
Helix 114
114
K
124 135Right-handed alpha
Helix 115
115
K
146 148Right-handed 310
Helix 116
116
K
164 175Right-handed alpha
Helix 117
117
K
176 179Right-handed 310
Helix 118
118
K
180 184Right-handed 310
Helix 119
119
K
194 199Right-handed alpha
Helix 120
120
K
207 212Right-handed alpha
Helix 121
121
K
224 249Right-handed alpha
Helix 122
122
L
11 16Right-handed alpha
Helix 123
123
L
40 62Right-handed alpha
Helix 124
124
L
90 108Right-handed alpha
Helix 125
125
L
124 135Right-handed alpha
Helix 126
126
L
146 148Right-handed 310
Helix 127
127
L
164 175Right-handed alpha
Helix 128
128
L
176 179Right-handed 310
Helix 129
129
L
180 184Right-handed 310
Helix 130
130
L
194 199Right-handed alpha
Helix 131
131
L
207 212Right-handed alpha
Helix 132
132
L
224 249Right-handed alpha
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There are 14 sheets in PDB entry 3LUB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
22 27parallel
Strand 3
A
112 117parallel
Strand 4
A
139 144parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
217 218anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
22 27parallel
Strand 3
B
112 117parallel
Strand 4
B
139 144parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 67first strand
Strand 2
C
22 27parallel
Strand 3
C
112 117parallel
Strand 4
C
139 144parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 162first strand
Strand 2
C
217 218anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
65 67first strand
Strand 2
D
22 27parallel
Strand 3
D
112 117parallel
Strand 4
D
139 144parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
65 67first strand
Strand 2
E
22 27parallel
Strand 3
E
112 117parallel
Strand 4
E
139 144parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
65 67first strand
Strand 2
F
22 27parallel
Strand 3
F
112 117parallel
Strand 4
F
139 144parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
65 67first strand
Strand 2
G
22 27parallel
Strand 3
G
112 117parallel
Strand 4
G
139 144parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
65 67first strand
Strand 2
H
22 27parallel
Strand 3
H
112 117parallel
Strand 4
H
139 144parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
65 67first strand
Strand 2
I
22 27parallel
Strand 3
I
112 117parallel
Strand 4
I
139 144parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
65 67first strand
Strand 2
J
22 27parallel
Strand 3
J
112 117parallel
Strand 4
J
139 144parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
65 67first strand
Strand 2
K
22 27parallel
Strand 3
K
112 117parallel
Strand 4
K
139 144parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
65 67first strand
Strand 2
L
22 27parallel
Strand 3
L
112 117parallel
Strand 4
L
139 144parallel
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