Analysis of interatomic Contacts of Structural Units in PDB entry:
3LUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LUF entry

There are 2 chains in PDB entry 3LUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLN 246
B
 LYS 2PHE 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3LUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 27Right-handed alpha
Helix 2
2
A
36 40Right-handed 310
Helix 3
3
A
62 71Right-handed alpha
Helix 4
4
A
83 93Right-handed alpha
Helix 5
5
A
103 121Right-handed alpha
Helix 6
6
A
131 144Right-handed alpha
Helix 7
7
A
154 165Right-handed alpha
Helix 8
8
A
181 193Right-handed alpha
Helix 9
9
A
210 218Right-handed alpha
Helix 10
10
A
229 246Right-handed alpha
Helix 11
11
B
11 26Right-handed alpha
Helix 12
12
B
36 40Right-handed 310
Helix 13
13
B
63 71Right-handed alpha
Helix 14
14
B
83 93Right-handed alpha
Helix 15
15
B
103 121Right-handed alpha
Helix 16
16
B
131 144Right-handed alpha
Helix 17
17
B
154 165Right-handed alpha
Helix 18
18
B
181 193Right-handed alpha
Helix 19
19
B
210 218Right-handed alpha
Helix 20
20
B
229 247Right-handed alpha
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There are 4 sheets in PDB entry 3LUF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
4 8parallel
Strand 3
A
47 53parallel
Strand 4
A
75 79parallel
Strand 5
A
97 100parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 152first strand
Strand 2
A
124 128parallel
Strand 3
A
168 173parallel
Strand 4
A
199 204parallel
Strand 5
A
222 225parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
4 8parallel
Strand 3
B
47 53parallel
Strand 4
B
75 79parallel
Strand 5
B
97 100parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 152first strand
Strand 2
B
124 128parallel
Strand 3
B
170 174parallel
Strand 4
B
199 205parallel
Strand 5
B
222 226parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il