Analysis of interatomic Contacts of Structural Units in PDB entry:
3LV4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LV4 entry

There are 2 chains in PDB entry 3LV4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 32ARG 472
B
 LYS 32LEU 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3LV4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 59Right-handed 310
Helix 2
2
A
86 91Right-handed alpha
Helix 3
3
A
91 99Right-handed alpha
Helix 4
4
A
277 281Right-handed 310
Helix 5
5
A
290 295Right-handed alpha
Helix 6
6
A
376 381Right-handed alpha
Helix 7
7
B
57 59Right-handed 310
Helix 8
8
B
86 91Right-handed alpha
Helix 9
9
B
91 99Right-handed alpha
Helix 10
10
B
277 281Right-handed 310
Helix 11
11
B
290 295Right-handed alpha
Helix 12
12
B
376 381Right-handed alpha
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There are 12 sheets in PDB entry 3LV4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
51 56anti-parallel
Strand 3
A
60 64anti-parallel
Strand 4
A
71 74anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
116 123anti-parallel
Strand 3
A
130 137anti-parallel
Strand 4
A
145 153anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
186 190anti-parallel
Strand 3
A
197 202anti-parallel
Strand 4
A
217 220anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 235first strand
Strand 2
A
240 247anti-parallel
Strand 3
A
257 263anti-parallel
Strand 4
A
299 302anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 362first strand
Strand 2
A
346 354anti-parallel
Strand 3
A
330 337anti-parallel
Strand 4
A
310 323anti-parallel
Strand 5
A
305 307anti-parallel
Strand 6
A
398 399parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 390first strand
Strand 2
A
401 405anti-parallel
Strand 3
A
410 413anti-parallel
Strand 4
A
417 422anti-parallel
Strand 5
A
426 431anti-parallel
Strand 6
A
434 445anti-parallel
Strand 7
A
450 459anti-parallel
Strand 8
A
464 469anti-parallel
Strand 9
A
382 390anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 48first strand
Strand 2
B
51 55anti-parallel
Strand 3
B
61 64anti-parallel
Strand 4
B
71 74anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
116 123anti-parallel
Strand 3
B
130 137anti-parallel
Strand 4
B
145 153anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
186 190anti-parallel
Strand 3
B
197 202anti-parallel
Strand 4
B
217 220anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 234first strand
Strand 2
B
241 247anti-parallel
Strand 3
B
257 263anti-parallel
Strand 4
B
299 302anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 362first strand
Strand 2
B
346 354anti-parallel
Strand 3
B
330 337anti-parallel
Strand 4
B
310 323anti-parallel
Strand 5
B
305 307anti-parallel
Strand 6
B
398 399parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 390first strand
Strand 2
B
401 405anti-parallel
Strand 3
B
410 413anti-parallel
Strand 4
B
417 422anti-parallel
Strand 5
B
426 431anti-parallel
Strand 6
B
434 445anti-parallel
Strand 7
B
450 459anti-parallel
Strand 8
B
464 469anti-parallel
Strand 9
B
382 390anti-parallel
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