Analysis of interatomic Contacts of Structural Units in PDB entry:
3LVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3LVF entry

There are 4 chains in PDB entry 3LVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 GLY -1LYS 336
R
 ALA 2LYS 336
O
 ALA 2SER 335
Q
 ALA 2SER 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 3LVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
P
11 23Right-handed alpha
Helix 2
2
P
37 47Right-handed alpha
Helix 3
3
P
79 83Right-handed 310
Helix 4
4
P
102 112Right-handed alpha
Helix 5
5
P
135 139Right-handed 310
Helix 6
6
P
150 168Right-handed alpha
Helix 7
7
P
201 205Right-handed 310
Helix 8
8
P
216 220Right-handed 310
Helix 9
9
P
221 225Right-handed 310
Helix 10
10
P
255 266Right-handed alpha
Helix 11
11
P
279 284Right-handed 310
Helix 12
12
P
295 297Right-handed 310
Helix 13
13
P
317 335Right-handed alpha
Helix 14
14
R
11 22Right-handed alpha
Helix 15
15
R
37 47Right-handed alpha
Helix 16
16
R
79 83Right-handed 310
Helix 17
17
R
102 112Right-handed alpha
Helix 18
18
R
135 139Right-handed 310
Helix 19
19
R
150 168Right-handed alpha
Helix 20
20
R
201 205Right-handed 310
Helix 21
21
R
216 220Right-handed 310
Helix 22
22
R
221 225Right-handed 310
Helix 23
23
R
255 266Right-handed alpha
Helix 24
24
R
279 284Right-handed 310
Helix 25
25
R
295 297Right-handed 310
Helix 26
26
R
317 334Right-handed alpha
Helix 27
27
O
11 22Right-handed alpha
Helix 28
28
O
37 47Right-handed alpha
Helix 29
29
O
79 83Right-handed 310
Helix 30
30
O
102 113Right-handed alpha
Helix 31
31
O
135 139Right-handed 310
Helix 32
32
O
150 168Right-handed alpha
Helix 33
33
O
201 205Right-handed 310
Helix 34
34
O
216 220Right-handed 310
Helix 35
35
O
221 225Right-handed 310
Helix 36
36
O
255 266Right-handed alpha
Helix 37
37
O
279 284Right-handed 310
Helix 38
38
O
295 297Right-handed 310
Helix 39
39
O
317 335Right-handed alpha
Helix 40
40
Q
11 22Right-handed alpha
Helix 41
41
Q
37 47Right-handed alpha
Helix 42
42
Q
79 83Right-handed 310
Helix 43
43
Q
102 113Right-handed alpha
Helix 44
44
Q
135 139Right-handed 310
Helix 45
45
Q
150 168Right-handed alpha
Helix 46
46
Q
201 205Right-handed 310
Helix 47
47
Q
216 220Right-handed 310
Helix 48
48
Q
221 225Right-handed 310
Helix 49
49
Q
255 266Right-handed alpha
Helix 50
50
Q
279 284Right-handed 310
Helix 51
51
Q
295 297Right-handed 310
Helix 52
52
Q
317 334Right-handed alpha
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There are 12 sheets in PDB entry 3LVF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
58 61first strand
Strand 2
P
64 67anti-parallel
Strand 3
P
70 75anti-parallel
Strand 4
P
27 33parallel
Strand 5
P
3 8parallel
Strand 6
P
92 95parallel
Strand 7
P
116 119parallel
Strand 8
P
145 147parallel
Strand 9
P
128 129parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
207 210first strand
Strand 2
P
228 235anti-parallel
Strand 3
P
169 179parallel
Strand 4
P
241 249anti-parallel
Strand 5
P
305 314anti-parallel
Strand 6
P
290 293anti-parallel
Strand 7
P
271 274parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
207 210first strand
Strand 2
P
228 235anti-parallel
Strand 3
P
169 179parallel
Strand 4
P
241 249anti-parallel
Strand 5
P
305 314anti-parallel
Strand 6
P
298 302anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
58 61first strand
Strand 2
R
64 67anti-parallel
Strand 3
R
70 75anti-parallel
Strand 4
R
27 33parallel
Strand 5
R
3 8parallel
Strand 6
R
92 95parallel
Strand 7
R
116 119parallel
Strand 8
R
145 147parallel
Strand 9
R
128 129parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
207 210first strand
Strand 2
R
228 235anti-parallel
Strand 3
R
169 179parallel
Strand 4
R
241 249anti-parallel
Strand 5
R
305 314anti-parallel
Strand 6
R
290 293anti-parallel
Strand 7
R
271 274parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
207 210first strand
Strand 2
R
228 235anti-parallel
Strand 3
R
169 179parallel
Strand 4
R
241 249anti-parallel
Strand 5
R
305 314anti-parallel
Strand 6
R
298 302anti-parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
58 61first strand
Strand 2
O
64 67anti-parallel
Strand 3
O
70 75anti-parallel
Strand 4
O
27 33parallel
Strand 5
O
3 8parallel
Strand 6
O
92 95parallel
Strand 7
O
116 119parallel
Strand 8
O
145 147parallel
Strand 9
O
128 129parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
207 210first strand
Strand 2
O
228 235anti-parallel
Strand 3
O
169 179parallel
Strand 4
O
241 249anti-parallel
Strand 5
O
305 314anti-parallel
Strand 6
O
290 293anti-parallel
Strand 7
O
271 274parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
207 210first strand
Strand 2
O
228 235anti-parallel
Strand 3
O
169 179parallel
Strand 4
O
241 249anti-parallel
Strand 5
O
305 314anti-parallel
Strand 6
O
298 302anti-parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
58 60first strand
Strand 2
Q
64 67anti-parallel
Strand 3
Q
70 75anti-parallel
Strand 4
Q
27 33parallel
Strand 5
Q
3 8parallel
Strand 6
Q
92 95parallel
Strand 7
Q
116 119parallel
Strand 8
Q
145 147parallel
Strand 9
Q
128 129parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
207 210first strand
Strand 2
Q
228 235anti-parallel
Strand 3
Q
169 179parallel
Strand 4
Q
241 249anti-parallel
Strand 5
Q
305 314anti-parallel
Strand 6
Q
290 293anti-parallel
Strand 7
Q
271 274parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Q
207 210first strand
Strand 2
Q
228 235anti-parallel
Strand 3
Q
169 179parallel
Strand 4
Q
241 249anti-parallel
Strand 5
Q
305 314anti-parallel
Strand 6
Q
298 302anti-parallel
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